BAC Information

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BAC

Clone NameMSMg01-262K20
Chromosome3 (Build37)
Map Location 22,375,497 - 22,375,843
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040325, 7530428D23Rik, LOC100039465, LOC100040353, Tbl1xr1, LOC545506
Downstream geneLOC675593, LOC100040378, LOC623751, LOC100039548
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262K20.T7 (MSMg01no262_k20.b1)MSMg01-262K20.TJ (MSMg01no262_k20.g1)
ACCAG404712AG404713
length766785
length of high quality
(start - end)
351 (37 - 387)289 (68 - 356)
definitionCHROMAT_FILE: MSMg01no262_k20.b1 PHD_FILE: MSMg01no262_k20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:23 2005CHROMAT_FILE: MSMg01no262_k20.g1 PHD_FILE: MSMg01no262_k20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTCA
GAGTCACTCTCTCCTCCCACCTTCAACAAGCTCCACTGCTTAAGAATACT
CTCTCAGCCCTTTTTTCTCATGTCTAAAGCTCCTTGCCTTAAAGGCAATA
TAAGACCCACGATGTATTCAAAGGTGCCTGTGAGTGCAAGAGTTGAGCCT
GCTGGCCTCCATATCTCTAGAACATGTGTTTTCCCCATATCCAATGTCAC
CTCTGAACATGGCTTCTTGTGCTGCTTATATTTCAATGCATATGTGAGAG
CTTTATGTGGTATGTATAATATGTGCATGTTTATCTGTGTGTCTATAGGT
GCATGTGTACACATGTGCACATTCATGTAGATGCCAAAGGTAAACATAAG
CCCTGTCCACCCTTTTTCCGTACTCAGAAACTCTCGCTGGTCAGGAACTG
GCCAAGTAGGCCAGGCCAGGTATCTGCCTACCTCTGTCTCCTCAGGCTGT
GGTTGTTAGTAGACCACCATATATGGATTTCTCTTATGCGCCCTTAAGAG
ACCTACTTCGGTTCCTATTACTCGATTACCTCCACCCCTACCTACGTCAT
TTTTTTCCCCCTACACCTTTTTATTTTTCCACCCCCCCCTCTTCCATTCC
TGACCCCGCCGAAAGTTTATGCATTTGCTCTTTCTCCTACTTAACACTAT
ACTAACTTTGTACTCCCACAATCATTCCTTTTTTTTCCAATTCTCACCAC
TCAATAATGCCGTATA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCTGTTTAGTTGTGTACCCCATTTTTAATTGGG
TTATTTGGGTTGTTACTGTCTAAGTTCTTGAGTTGTTTATAAGTTTTGGA
TATTAGCCAATGTGAGGAAGAATCTTTCCCAATCTGTAGGCTGCCATTTT
ATTCTATTGACAGTGTCCTTTGCCTTACAGAAGTTTTTAGTTTCATGAGG
TCCCATTTATCAATTGTTGATTTTAGAGCCTGACTCATTGGTGTTCTGTT
GAGGAAACTGTCTCATGTGTTCAAGGCTATTTCACACTTTCTCTTTTATC
AGATTTAGTGTATCTGCCCTTATGATGAGGTCTTTGATTCACTTGGATTA
GAATTCTCCCCCCCTCAATACATACGTATCCACTTCCATTCCTCTATACG
TACTTATCCACGTTATATACCCATCTTTTCCCCGATTTTCTCTCTTTTCC
CCCCGTTATATCTCCGCTATTCTTTTCCTTTCCCCTCCCTACTTCCCCTA
TTTTTTCCTTTCCTTCTTCCCCCCCCCCTTTTTCTCCCCCTCCCTTTATC
TCCTCCTTCCCTCTTTTCTCCCCCTTATTTTTCCCTTTTTTTCCCTCCTT
CTTCACCTACCCTCCACTCTCCTTTTTTCTTCTTCCCCCTTTCTTATTTT
TTATTCCCCCTTGCTTTATTACCCCATCCCCTTTTCTTTTTTTTTTCCTC
CCTTTTTTTTCCCCCTCCTTTCCCCCTTTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_k20.b1 MSMg01no262_k20.b1 CHROMAT_FILE:
MSMg01no262_k20.b1 PHD_FILE: MSMg01no262_k20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:23 2005
         (351 letters)



>mm_chr3_22375293_22376043
          Length = 751

 Score =  671 bits (347), Expect = 0.0
 Identities = 347/347 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctcagagtcactctctcctcccaccttcaacaagctccactgcttaagaatact 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 gaattcctcagagtcactctctcctcccaccttcaacaagctccactgcttaagaatact 492

                                                                       
Query: 65  ctctcagcccttttttctcatgtctaaagctccttgccttaaaggcaatataagacccac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ctctcagcccttttttctcatgtctaaagctccttgccttaaaggcaatataagacccac 432

                                                                       
Query: 125 gatgtattcaaaggtgcctgtgagtgcaagagttgagcctgctggcctccatatctctag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 gatgtattcaaaggtgcctgtgagtgcaagagttgagcctgctggcctccatatctctag 372

                                                                       
Query: 185 aacatgtgttttccccatatccaatgtcacctctgaacatggcttcttgtgctgcttata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 aacatgtgttttccccatatccaatgtcacctctgaacatggcttcttgtgctgcttata 312

                                                                       
Query: 245 tttcaatgcatatgtgagagctttatgtggtatgtataatatgtgcatgtttatctgtgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tttcaatgcatatgtgagagctttatgtggtatgtataatatgtgcatgtttatctgtgt 252

                                                          
Query: 305 gtctataggtgcatgtgtacacatgtgcacattcatgtagatgccaa 351
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 gtctataggtgcatgtgtacacatgtgcacattcatgtagatgccaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 751
Length adjustment: 9
Effective length of query: 342
Effective length of database: 742
Effective search space:   253764
Effective search space used:   253764
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)