XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
TGTTTACCTCTGCACCCCATTTTTTTCCATTTTTTATTAGGTATTTAGCT
CATTTACATTTCCAATGCTATACCAAAAGTCTCCCATACCCACCCCCCCA
CTCCCCTACCCACCCACTCCCCATTTTTGGCCCTGGCATTCCCCTGTACT
GGGGAATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTCACAGTGATGGC
CGACTGGGCCATCTTTTAATACATATGCAGCTAGAGACAAGAGCTCTGGG
GTACTGCTTAGTTCATATTGTTGTTGCACCTATAGGGTTGCAGTTCCCTT
TAGTCCCTCGGGTGCTTTCTCTAGTTCCTCCATTGGGGGTCCTGTGGTCC
TTTCCCCCCCCGACTGTGAGCATCTACTTCTGAGTTTTCCAGGTCCTGGC
ATAGTCTCACATGAGACAGCTATATCTGGGTCCTTTCAGTACAATCTTGC
TAGTGTATACAATGATGTCAGCGCCCGGAACCCGATCACGCAATACATCT
CTGCATCTGGCCACTAATACCTGTTTCATCCCCCCATTCTAACTTACCGT
ATATTCGTCTCTCGTCCTCCTTTTTTTGATACCCCCCCCTTTTTATTTCT
ATATCTCCCCCCCAAAATGTACACCTTCTACCCCTTTCTATACCCATCCC
TCATAACTTAATTTATACTCCACCCCTCCATTTCGTCCTTTTTTTCACCT
TACCAATAGTGCTTCTCTCTACCCGTAAN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGGACAGCCAGAGCTAAACAGAGAAACCAT
GTCTCATTAAATAAATAAATAAATAAATAAATATTAAAAACAAACAAAAA
TTATCAAATTCCAGTGGAAATATTTTAATAATACACACATGCTATAATTC
TGTTTCACATTAACATGTGAAACAAAAATCAACCAAAATTTCATGATATA
TTAGGAAAACATCAAATTATATCACTGGTTGTCAACAAGGAGAGAGTTTT
GACCACCAGCTGTAACCAAGGGGACATTGGATAATACAGACACTTGTACC
CTACTGCCCATGAGGATATGTATGCTTGTGTGTGTCCTTATGGAAGCTAG
AGGCTGACATCTGGTGTTTTCTCTAACTACTCTGTTTTTCAGGCAGTTCC
TTCATTGATATGGATTTGCTGATTAGAATAGGCTGGCAGCCCAATGAGGT
TTGGGTTCTTCCTTTTTCTGTCTTTATTAGAGACACACACCTTTTATGTC
ATGCTGGGATTTGAACACAGGTCTCAAACATCGAAGGCTTCACTTACTGA
CAAAACTATCTCTCAGCCCCTACAGTGAACACTTGATATAAAAGTTTACA
AATAACATACATTTCTTGTGTTTTTCTGCATCCACAGATCTCTGAAATCA
CTGTAGTTGACCTTGCGACCTACTATACCATCCTCAACCATATTATTAT

Query= MSMg01no262_m16.g1 MSMg01no262_m16.g1 CHROMAT_FILE:
MSMg01no262_m16.g1 PHD_FILE: MSMg01no262_m16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:31 2005
         (547 letters)



>mm_chr3_3615866_3616812
          Length = 947

 Score = 1031 bits (533), Expect = 0.0
 Identities = 545/551 (98%), Gaps = 4/551 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacagccagagctaaacagagaaaccatgtctcat----taaataaataaataaata 56
           ||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||
Sbjct: 578 caggacagccagagctaaacagagaaaccatgtctcattaaataaataaataaataaata 519

                                                                       
Query: 57  aataaatattaaaaacaaacaaaaattatcaaattccagtggaaatattttaataataca 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 aataaatattaaaaacaaacaaaaattatcaaattccagtggaaatattttaataataca 459

                                                                       
Query: 117 cacatgctataattctgtttcacattaacatgtgaaacaaaaatcaaccaaaatttcatg 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 cacatgctataattctgtttcacattaacatgtgaaacaaaaatcaaccaaaatttcatg 399

                                                                       
Query: 177 atatattaggaaaacatcaaattatatcactggttgtcaacaaggagagagttttgacca 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 atatattaggaaaacatcaaattatatcactggttgtcaacaaggagagagttttgacca 339

                                                                       
Query: 237 ccagctgtaaccaaggggacattggataatacagacacttgtaccctactgcccatgagg 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ccagctgtaaccaaggggacattggataatacagacacttgtaccctactgcccatgagg 279

                                                                       
Query: 297 atatgtatgcttgtgtgtgtccttatggaagctagaggctgacatctggtgttttctcta 356
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 278 atatgtatgcttgtgtgtgtccttatggaagctagaggctgatatctggtgttttctcta 219

                                                                       
Query: 357 actactctgtttttcaggcagttccttcattgatatggatttgctgattagaataggctg 416
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 218 actactctgtttttcaggcagttccctcattgatatggatttgctgattagaataggctg 159

                                                                       
Query: 417 gcagcccaatgaggtttgggttcttcctttttctgtctttattagagacacacacctttt 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 gcagcccaatgaggtttgggttcttcctttttctgtctttattagagacacacacctttt 99

                                                                       
Query: 477 atgtcatgctgggatttgaacacaggtctcaaacatcgaaggcttcacttactgacaaaa 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98  atgtcatgctgggatttgaacacaggtctcaaacatcgaaggcttcacttactgacaaaa 39

                      
Query: 537 ctatctctcag 547
           |||||||||||
Sbjct: 38  ctatctctcag 28


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space:   503169
Effective search space used:   503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)