BAC Information

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BAC

Clone NameMSMg01-263D23
Chromosome3 (Build37)
Map Location 40,831,107 - 40,831,396
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2
Downstream genePgrmc2, EG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263D23.T7 (MSMg01no263_d23.b1)MSMg01-263D23.TJ (MSMg01no263_d23.g1)
ACCAG405124AG405125
length743739
length of high quality
(start - end)		318 (49 - 366)293 (79 - 371)
definitionCHROMAT_FILE: MSMg01no263_d23.b1 PHD_FILE: MSMg01no263_d23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:06 2005CHROMAT_FILE: MSMg01no263_d23.g1 PHD_FILE: MSMg01no263_d23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTCATCTGATTCAGAGCTACTAAGAGCTGGCTCCTTGAGCTC
ATCTAGTGATGAGTATAGGCTCCTTCTCCTAGAGACCTCCGCTAATTGAT
CTTTTTTCTTTTCCTTCCTTCTAATCGCTCCCCAGGTATTCTTACCTGAC
CTAAACTTTTCCTCGGGTTCAAGACCCGTGGAAAGGCCTGTATACTTATT
TTGTGCGCCATATTTCCTCTTTGCTCCTACTCTCTCTCCCGCTTTACTTC
TGATAGATTGCCCTGAATTTCATCCAAAATTTTCAGCCCTGCCTTAACCG
CTTGATAACATGTGATTTTTATCAAAAACGCTCCCACCACTAGAGAAAGT
TCAAGGCCAAACATACCTTGCAAAGCTATTTCCCACTTTACTTCTGATAG
ACTGTCTTGAATTTCGTTAGAAAGTTCAAGACCAGACTTACCTTGTAAAG
CTATACTTACGGGTACCCTGTTCCCCAGCTGAAGAGTTCTGAATTCACGC
AGTTGAATCCTTCTCAACAGTCTGTTTTACAGGAACACTTCATTACCACC
GTTCCCCAGCTGAGGAGTTCTGAATCCAGGCCGGATCCTTCTCAACAGTC
TGTTTTACGGGAACCTTTATGACCGTGACCCGCAGTTCTGGTTCCGGAAT
GAGGGATCTTCCTTGCGCAGGTGATGGTAACCGTCCCGGGTTT

CACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTGGTCCAAGTCTTTTATTG
AGAATATTCTGATTAGCAATTCAATCTCTTTTATTACAGGTCAGTTGAGA
TTTTACTTCTTCATAATTCAGTTGAAAGTATTGCTATAGTTTGGAGATTG
AGTGTTTCCAAAGGCTTGATCACCAGTGTGGTGCCTGTGGGAGCTAATGG
AACCTTTAAGAGGCAGGGTTAAATGGAGAGCCTTTAGGTCATAAACCTGT
CAAGGGGATTGTGGGACCCTGGCCTTCTCTTTGCTCTTTTGCTTCCTGGC
TATGGGAAAAATGGCTTTTCTGTGTCATGACTGCGACTGCTGCCTGTGCC
CACAGCACAGGTCCTCCTCAGCCCACAGCACAGGTCCATCTCAGCCCACA
GCACAGGTCCATCTCAGCCCACAGCACAGGTCCATCTCAGACTACTGCAC
AGGTCCATCTCAGACTACTGCACAGGTCCATCTCAGACCACTGTACAGGC
CCATCTCAGACCACAGCACAGGTCCATCTCAGACCACATCACAGGTCTAT
CACAGACAACAACACAGGTCCATCACAAACATGTTGACAGATGCGAGCAC
ACACCTTTAATCCTGACACTTGTGAGACAGGAATAAGGTGATCTGAGTTT
GAGGTCAGCTTGGGCTACATAGTAAGAAAGTTTCTTACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_d23.g1 MSMg01no263_d23.g1 CHROMAT_FILE:
MSMg01no263_d23.g1 PHD_FILE: MSMg01no263_d23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:07 2005
         (293 letters)



>mm_chr3_40830813_40831505
          Length = 693

 Score =  553 bits (286), Expect = e-162
 Identities = 289/290 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttggtccaagtcttttattgagaatattctgattagcaattcaatctcttttattaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 acttggtccaagtcttttattgagaatattctgattagcaattcaatctcttttattaca 525

                                                                       
Query: 61  ggtcagttgagattttacttcttcataattcagttgaaagtattgctatagtttggagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 ggtcagttgagattttacttcttcataattcagttgaaagtattgctatagtttggagat 465

                                                                       
Query: 121 tgagtgtttccaaaggcttgatcaccagtgtggtgcctgtgggagctaatggaaccttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tgagtgtttccaaaggcttgatcaccagtgtggtgcctgtgggagctaatggaaccttta 405

                                                                       
Query: 181 agaggcagggttaaatggagagcctttaggtcataaacctgtcaaggggattgtgggacc 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 agaggtagggttaaatggagagcctttaggtcataaacctgtcaaggggattgtgggacc 345

                                                             
Query: 241 ctggccttctctttgctcttttgcttcctggctatgggaaaaatggcttt 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ctggccttctctttgctcttttgcttcctggctatgggaaaaatggcttt 295


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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