Query= MSMg01no263_f16.b1 MSMg01no263_f16.b1 CHROMAT_FILE:
MSMg01no263_f16.b1 PHD_FILE: MSMg01no263_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:15 2005
(594 letters)
>mm_chr3_115602077_115603072
Length = 996
Score = 862 bits (446), Expect = 0.0
Identities = 470/478 (98%), Gaps = 2/478 (0%)
Strand = Plus / Minus
Query: 5 gaattcaagtcata-cgacaactgttcttcctcggattccactaggcacctgcagtggtc 63
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gaattcaagtcaaagagacaactgttcttcctcggattccactaggcacctgcagtggtc 419
Query: 64 ctttattcgggtcttttagggatgcagtgttcgtctatccacatccctcacaaga-ggaa 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 418 ctttattcgggtcttttagggatgcagtgttcgtctatccacatccctcacaagatggaa 359
Query: 123 ttccaatggcagcacttacagaaagggacatgccatatcctgatgtctgctaaaggtgct 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 358 ttccaatggcagcacttacagaaagggacatgccatatcctgatgtctgctaaagatgct 299
Query: 183 tcgagtatataaactcagcaatttgattcttgtctcaggacttctttagattagttttaa 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tcgagtatataaactcagcaatttgattcttgtctcaggacttctttagattagttttaa 239
Query: 243 gaaactttagctggccattagtaatgaatccaactggcatttcaatacatgtatatgagt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 gaaactttagctggccattagtaatgaatccaactggcatttcaatacatgtatatgagt 179
Query: 303 aatgatcaaaatgatttattacctcatttatcattttcctgtgttcagaatactcagact 362
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 aatgatcaaaatgacttattacctcatttatcattttcctgtgttcagaatactcagact 119
Query: 363 cttctccactatttatttcaggatatccaattgtcaccaaccatagtttcctttgcattg 422
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 cttctttactatttatttcaggatatccaattgtcaccaaccatagtttcctttgcattg 59
Query: 423 taagttattagaattgctctgtctccgcttcgccctgtgccagtgcccgtgccagtga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 taagttattagaattgctctgtctccgcttcgccctgtgccagtgcccgtgccagtga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 996
Length adjustment: 10
Effective length of query: 584
Effective length of database: 986
Effective search space: 575824
Effective search space used: 575824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no263_f16.g1 MSMg01no263_f16.g1 CHROMAT_FILE:
MSMg01no263_f16.g1 PHD_FILE: MSMg01no263_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:15 2005
(595 letters)
>mm_chr3_115520850_115521843
Length = 994
Score = 1062 bits (549), Expect = 0.0
Identities = 585/599 (97%), Gaps = 5/599 (0%)
Strand = Plus / Plus
Query: 1 agtaaaacagactagaagtagaagtttaatgaacaatgaggtagaagtattagccagctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 agtaaaacagactagaagtagaagtttaatgaacaatgaggtagaagtattagccagctt 256
Query: 61 aaaaattatatttaaaacgtcaaggctaccaatgtacctcagtgtagaatacttggccag 120
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 257 aaaaattatatttaaaacgtcaaggctaccaatgtacctcggtgtagaatacttggccag 316
Query: 121 catgtgtaaaacccagtgttttatcctaaatgaatgcacacacgcgca----cgcacaca 176
|||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||
Sbjct: 317 catgtgtaaaacccagtgttttatcctaaatgaacgcacacacgcgcacgcgcgcgcaca 376
Query: 177 cacacactatggattagttggaaagcagaatatattcagaactcgggtagttcaggaagg 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 cacacactatggattagttggaaagcagaatatattcagaactcgggtagttcaggaagg 436
Query: 237 aagctggcaagcagtggtgagatgcatggtatggattatctccagcagcctaaacatagc 296
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 437 aagctggcaagcagtggtgagatgcatggtatggattatctccagcagcctaaacataac 496
Query: 297 ttaaggaaccaagtacagctaagcgaaaccagaaaaccaacgagtaacacagatggcatg 356
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 497 ttaaggaaccaagtacagctaagcgaaaccagaaaaccaacgagtaatacagatggcatg 556
Query: 357 aatttgaaccaagacttcggtaaagggcagtagagagaacagcaaaatggaggaagatct 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aatttgaaccaagacttcggtaaagggcagtagagagaacagcaaaatggaggaagatct 616
Query: 417 gcgagggtcttcatgcacacactgagctacagggcagctggcacaagtcccgaggctttg 476
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gcgagggtctgcatgcagacactgagctacagggcagctggcacaagtcccgaggctttg 676
Query: 477 gacaggacagttagactgaaaatgatgtattcaccgatactaggggaacagaaaatgtgt 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 677 gacaggacagttagactgaaaatgatgtattcaccgatactaggggaacagaaaacgtgc 736
Query: 537 cagacatagaaagaagacgagtttacttttggacacattgaactgattccctctgcggt 595
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 737 cagacatagaaagaagacgagtttacttttggacacattgaactgat-ccctctgcggt 794
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 994
Length adjustment: 10
Effective length of query: 585
Effective length of database: 984
Effective search space: 575640
Effective search space used: 575640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
