BAC Information

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BAC

Clone NameMSMg01-263N08
Chromosome3 (Build37)
Map Location 76,670,712 - 76,850,439
singlet/doubletdoublet
Overlap geneLOC100041625, LOC100041635
Upstream geneGolph4, Fstl5
Downstream geneDnmt3a-ps1, EG626461
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263N08.T7 (MSMg01no263_n08.b1)MSMg01-263N08.TJ (MSMg01no263_n08.g1)
ACCAG405547AG405548
length791728
length of high quality
(start - end)		340 (69 - 408)580 (76 - 655)
definitionCHROMAT_FILE: MSMg01no263_n08.b1 PHD_FILE: MSMg01no263_n08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:52 2005CHROMAT_FILE: MSMg01no263_n08.g1 PHD_FILE: MSMg01no263_n08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,850,100 - 76,850,439)(76,670,712 - 76,671,291)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCAGCCGTCTACCGGCTGTGCTTTTTCAGTGACAGATGAGGTATTCATT
TCTGTCCTTTATTTTTACTTGGAAGGAAAATGCTTTATTTCCCATTTACT
TTAATGTATTTCTGAAGGAGGAGCTTTTAGGAAGTAAAATGTTCTGGCAC
TCTAAAGGCTCCCCTTGCTGTGTGTAATTCTGGGATACTTCTTTCAGTCT
TTCCTCTTGTCACCCGAACTATGCTTCTGTTTGCTCACAAGCTTCTCCAT
ACATTTTACAGGACATCGTTCATTGTGAAACCTACAAATTGTAGTGCTGA
GGGAAAGAATCCATTTTTCCAAAAAACAATTTCTGTCTTCTCCTCCTAAC
TTCTATAATGCCACCCCAAGGATACAATTTATCCACTTAAAATCTATCCC
CATCACAAGATCAATCCATTGTTGTTCTATTTTCCTTCCCCTAAGAACAC
TTCATCTTGGCTGACAACCACCTTATGTTTGTAAACTCCTAAATTCACCT
GTGTTACAGATAGTACAGATTTTGTTTTTGACCTCACTCTTTTTTCCTGC
GCTTTGCAATACTCTTTTTAACCTCTTTTTTTTTTTTTTATTGCCCTCCC
CTTCATTCCCGAATTACGTCCTTTCCTTATCAGTTACTTATTCTCATTTT
CCCCTACCCTTTCCTTATTAATTTACACTATCTATTCCCCCTCACTTTTA
CATTTCTCTCTTCTCCTCATTTCACCATCACACCTCGTCTC

NCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCATAAATGTCTTTTCTTTTTTC
ATGTGTACACTCAACTAGATGACAGCCATTTATGCACGATGTAGGTAAAC
CTGAGGGACATTAACAGCTCAGTGAGCTTTTCCTGACTCTTCAGCTGCCC
AATGTGGAATTGAATTTCTGTTGTTTACAAGTCACACAGTTTGTAAATTG
TGCTGTACCACTGACAGCCGATTCCTCATTATTTGAAAGTAGTGTTTCAC
TTTAAGCCTCAATTTCCTTGTTTACTTATAAAAGTAGGGAAATATTTCCA
AATTAACAGAAATATGAATGTATGAGTTTAAGCAAAATTCCTTGAAATCA
ATGAATGCATACTAAATGCCTATAGTATCAATAAAATAACCCATGCTAGG
CAAATTGCTGAGCTATAACAAAGGCCTCTTAATTTTCTTCTTTCTTTATT
TTTTTAAGACAACCTCAAGTTAATTGTGCATGTTTCTTTCAATGTTATAA
ACATGAAACTCATGTTAAGTGATGAATATCACAGCACTTCAAATCCTTTT
TACTTGCTTGAAAGGCTAACAAAGGCTCCAGTGAAATTACTATGGTAGGA
GGCACTTGAGGCTTCTCACCTGTGAAAGACTAAGATCACAAGTATTTGAA
GTTACCTAAAGACCATTATAAAGGATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_n08.b1 MSMg01no263_n08.b1 CHROMAT_FILE:
MSMg01no263_n08.b1 PHD_FILE: MSMg01no263_n08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:52 2005
         (340 letters)



>mm_chr3_76849900_76850639
          Length = 740

 Score =  588 bits (304), Expect = e-172
 Identities = 331/340 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgctttttcagtgacagatgaggtattcatttctgtcctttatttttacttggaaggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 gtgctttttcagtgacagatgaggtattcatttctgtcctttatttttacttggaaggaa 481

                                                                       
Query: 61  aatgctttatttcccatttactttaatgtatttctgaaggaggagcttttaggaagtaaa 120
           ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 480 aatgctttatttcccatttactttaatgtatttctgaaggaggggtttttaggaagtaaa 421

                                                                       
Query: 121 atgttctggcactctaaaggctccccttgctgtgtgtaattctgggatacttctttcagt 180
           || |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 420 attttctggcattctaaaggctccccttgctgtgtgtgattctgggatacttctttcagt 361

                                                                       
Query: 181 ctttcctcttgtcacccgaactatgcttctgtttgctcacaagcttctccatacatttta 240
           ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 360 ctttcctcttgtcacccaaactatgcctctgtttgctcacaagcttctccatacatttta 301

                                                                       
Query: 241 caggacatcgttcattgtgaaacctacaaattgtagtgctgagggaaagaatccattttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 caggacatcgttcattgtgaaacctacaaattgtagtgctgagggaaagaatccattttt 241

                                                   
Query: 301 ccaaaaaacaatttctgtcttctcctcctaacttctataa 340
           | |||||| |||||||||||||||||||||||||||||||
Sbjct: 240 caaaaaaataatttctgtcttctcctcctaacttctataa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space:   241961
Effective search space used:   241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no263_n08.g1 MSMg01no263_n08.g1 CHROMAT_FILE:
MSMg01no263_n08.g1 PHD_FILE: MSMg01no263_n08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:52 2005
         (580 letters)



>mm_chr3_76670512_76671491
          Length = 980

 Score = 1075 bits (556), Expect = 0.0
 Identities = 574/580 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttcataaatgtcttttcttttttcatgtgtacactcaactagatgacagccatttatgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttcataaatgtcttttcttttttcatgtgtacactcaactagatgacagccatttatgc 260

                                                                       
Query: 61  acgatgtaggtaaacctgagggacattaacagctcagtgagcttttcctgactcttcagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acgatgtaggtaaacctgagggacattaacagctcagtgagcttttcctgactcttcagc 320

                                                                       
Query: 121 tgcccaatgtggaattgaatttctgttgtttacaagtcacacagtttgtaaattgtgctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcccaatgtggaattgaatttctgttgtttacaagtcacacagtttgtaaattgtgctg 380

                                                                       
Query: 181 taccactgacagccgattcctcattatttgaaagtagtgtttcactttaagcctcaattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taccactgacagccgattcctcattatttgaaagtagtgtttcactttaagcctcaattt 440

                                                                       
Query: 241 ccttgtttacttataaaagtagggaaatatttccaaattaacagaaatatgaatgtatga 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccttgtttacttagaaaagtagggaaatatttccaaattaacagaaatatgaatgtatga 500

                                                                       
Query: 301 gtttaagcaaaattccttgaaatcaatgaatgcatactaaatgcctatagtatcaataaa 360
           ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 gtttaagtaaaattccttgaaatcaatgaatgcatactaaatgcttatagtatcaataaa 560

                                                                       
Query: 361 ataacccatgctaggcaaattgctgagctataacaaaggcctcttaattttcttctttct 420
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atagcccatgctaggcaaattgctgagctataacaaaggcctcttaattttcttctttct 620

                                                                       
Query: 421 ttatttttttaagacaacctcaagttaattgtgcatgtttctttcaatgttataaacatg 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 621 ttatttttttaagacaacctcaagttaattgtgcatgtttctttcaatgttataagtatg 680

                                                                       
Query: 481 aaactcatgttaagtgatgaatatcacagcacttcaaatcctttttacttgcttgaaagg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaactcatgttaagtgatgaatatcacagcacttcaaatcctttttacttgcttgaaagg 740

                                                   
Query: 541 ctaacaaaggctccagtgaaattactatggtaggaggcac 580
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctaacaaaggctccagtgaaattactatggtaggaggcac 780


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space:   552900
Effective search space used:   552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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