TCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGTACAATCACCATCAAAATATAATTGTTATTCTTCAGAAGCAA
AATCCAAAATTCTATATGAATACAAAAAATACCTTTAAAATCTAAAGTAA
TTATAGGCAAAATGTTCAAATGTGGAAACACCATCTAGTTTTAAGACATT
GTAACTGAATCTACAAAATTTGGCAATAAAAGCAGATTGAACAAAAGAAC
AGAATTAGGACCCAATAAATAAATTCACATATCTACAGTGAACTGATTTT
TGACAAAGAAAGAAAAACGTATGTTTAGTAAAATACAGCCTTTTCAACAA
ATAATTCTGTAAAAACTAGGCATAGATATGGAAAGAGATCACACCTACTC
TTGCTCTGATAAGTACTAACGCAATTTTGATTTATTATATTTTATTATTT
TTATAGGATTGAAAAGACAAAATCAGAAGGATTGAGGTTGCTGAGGAGAC
AAATATTGAAGACCTGGGATCAATCACCAGGAACAGAAGTGGGTATACAT
GTACACTCATACACAACACATGCACATAAAATATAAGTTAAAAGACAGCA
TCATAAAAATAATTAGAAATTTACTTCATTGGCGTTATAGCATAAAGACA
ATTCTGTTCAACAATAAATTACAAAGATGCTATAAAGGAACAGATTTATA
TTGATTTAACGTATAATTTGTAAATAACTACAATATATTGAAGCTTCTN

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGAGCTGTAACACTGAAATCTTC
AAGGAAGAGTTTCTCCCTCTCTGTCATTTACTCTGTTACATCTGTTCTGG
GCTCCACTTCATCCTCTCCTACCAGGTGAGTAGCGGTGCCTGGACACCCC
GAGGGACAAAGCAGAATGTGGAATCATAAACTATCAACTTAGAGGACTTC
CTTAGCCCTTCTTTAAAAATTAGGTCTTTTGGTCTTTTAAACTTTCTTCG
TTTGATAATGTTGTGATTTCCCTTCAGTCCCTACTTGCATGTAGGATTGA
GGGTGATAATTCTTTTCTCCCAGGATGGCTGTGTCATTTCTTTTGATCAC
ATTGATCTCTGGAGTACTCTCTTTCATTTAATTTGGTTTGGATTGTAAGT
TGGTGTGATTTTTATCCCCACTCTCCTTCCTTACTCTTCTATTTCTTCTT
CATTTCCTTTCTCTTATTCCTTAAATTAAAATTTTTTTTTTTTATATAAT
ATTTCCTTTTTTCTTTTTCTCTTTCTTTTTCTTTTCTTCCCCCCTATTAT
CTTATTAACAATAATATACCAATCTATCTTAATATTATTTTTACTATATC
CTTCCTTTACTTCTTTTTTATTTTTTTTTTTNCTNCTTTCATTTCTTTCT
CTCTTTTCTTTTCACAATCTATACTATTTTTATTAACTTATTTTCT

Query= MSMg01no263_n16.b1 MSMg01no263_n16.b1 CHROMAT_FILE:
MSMg01no263_n16.b1 PHD_FILE: MSMg01no263_n16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:53 2005
         (554 letters)



>mm_chr3_18302470_18303423
          Length = 954

 Score =  982 bits (508), Expect = 0.0
 Identities = 541/552 (98%)
 Strand = Plus / Plus

                                                                       
Query: 3   aaaatataattgttattcttcagaagcaaaatccaaaattctatatgaatacaaaaaata 62
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 203 aaaatataattgttattcttcagaagcaaaatccacaattctatatgaatacaaaaaata 262

                                                                       
Query: 63  cctttaaaatctaaagtaattataggcaaaatgttcaaatgtggaaacaccatctagttt 122
           |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 263 cctttaaaatctaaagtagttataggcaaaatattcaaatgtggaaacaccatctagttt 322

                                                                       
Query: 123 taagacattgtaactgaatctacaaaatttggcaataaaagcagattgaacaaaagaaca 182
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 taagacattgtaactgaacctacaaaatttggcaataaaagcagattgaacaaaagaaca 382

                                                                       
Query: 183 gaattaggacccaataaataaattcacatatctacagtgaactgatttttgacaaagaaa 242
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 383 gaattaggacccaataaataaattcacatatttacagtgaactgatttttgacaaagaaa 442

                                                                       
Query: 243 gaaaaacgtatgtttagtaaaatacagccttttcaacaaataattctgtaaaaactaggc 302
           ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 443 gaaaaacatatgtttagtaaaatacagccttttcaacaaataatgctgtaaaaactaggc 502

                                                                       
Query: 303 atagatatggaaagagatcacacctactcttgctctgataagtactaacgcaattttgat 362
           |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 503 atagatatggaaagagatcacacctactcttgctctgataagtactaatgtaattttgat 562

                                                                       
Query: 363 ttattatattttattatttttataggattgaaaagacaaaatcagaaggattgaggttgc 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ttattatattttattatttttataggattgaaaagacaaaatcagaaggattgaggttgc 622

                                                                       
Query: 423 tgaggagacaaatattgaagacctgggatcaatcaccaggaacagaagtgggtatacatg 482
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 623 tgaggagacaaatattgaagacctaggatcaatcaccaggaacagaagtgggtatacatg 682

                                                                       
Query: 483 tacactcatacacaacacatgcacataaaatataagttaaaagacagcatcataaaaata 542
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 683 tacactcatacacaacacatgcacataaaataaaagttaaaagacagcatcataaaaata 742

                       
Query: 543 attagaaattta 554
           ||||||||||||
Sbjct: 743 attagaaattta 754


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space:   513536
Effective search space used:   513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)