BAC Information

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BAC

Clone NameMSMg01-264K13
Chromosome3 (Build37)
Map Location 78,963,658 - 78,963,950
singlet/doubletsinglet
Overlap geneRapgef2
Upstream geneLOC100041691, LOC383883, LOC100041748, LOC100041716, LOC100041725, LOC100041766
Downstream geneLOC100041741, LOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik, Rxfp1, Tmem144, 1110032E23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264K13.T7 (MSMg01no264_k13.b1)MSMg01-264K13.TJ (MSMg01no264_k13.g1)
ACCAG406144AG406145
length769759
length of high quality
(start - end)
107 (505 - 611)293 (76 - 368)
definitionCHROMAT_FILE: MSMg01no264_k13.b1 PHD_FILE: MSMg01no264_k13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:54 2005CHROMAT_FILE: MSMg01no264_k13.g1 PHD_FILE: MSMg01no264_k13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTTNNNNNNNNNNNNNNAAATTTTTGTTGGGNNNNGGGGGNNNNNNN
NTTTTTAATAAXXXXXXXXXXXXXXXXXXXXXXXXXTCCATATGGATGNG
NGGAATTNTTTAGTGACAGTGAGTAAAGNTTTTANNTTATTTNNNATNAG
AATAAAAGTAATATATTTGTGTTCCAATATNAGNATTTNNNTNANANATT
AGAGAGTNATAATNAGGGNNAATGTGATANATTGAAGTTTTTTTTCNNNN
NATNAGTNTTTTCTTAATTNNTTTAGANANAGANAGGTGAGATTAATGTT
TAGTGAAGGGTTNNTGANAGANNANTTAAATGATGGATNNANTCTGTTGG
ANTTAGANATGAGNTATAATGGTTATNANNTGTNATAGAGGNNNTTGGAA
GGNTGTATTTTTTTTTTAGCCCACACCGCGCGCTTAGTGTTACAGAGAAC
TCAGCTATAATGCTCTAAGCATGATAAAAATTAATAAGGTTTATGGAGGA
GGAGCAAGAAAGTGGTAGACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTGTGTGTGCGTGTGTCTGTGTGTGTATGTAAAAA
CAATTAATCACAGTAGAAGGACTCAGATGGAGAATAGGATAGATGGCTCT
TGTTACATTTTACCCTTAATTAGAATTACGATTCCGTGATGTTTTTTTTT
TATGGTAACAAACGTGAGGGAGATAAAAAGACTTATGATAGAAAGTTTAA
CTGTTTTATGTTATGGAAT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTTATATAACCGTGGCTGTACTGG
AACTCACTGAGCTTTTGACTTAATGCCATTACTATCTAGAATGAAAACAG
TTTAAGAAGGTGTACAGTCAGACAATAGCCAGCCTCTTGGCTCCTTAAAA
CAACCCATTGTTGCTAGTTGCTGTTTATCTCTGTGTTATAATGTGATAGG
CCCTGACTGACAAGTAATCCTGCTGAAAGGTTAGGGCTCTTCTGCTCTAA
TCAACAGTAGTGCACGCTAAGTGTCTAAGTTCACTGCAAAGAAAAACAAA
CTGAAGCTCTCAAGTGCTCTTTTAGTTCACCACCGCCCCCGTCAAGAAAA
GGAAGGTCAAGGCTACTCTGCCCATCCCACTCGGCTGAAGACTATTTATT
GCATAAAGTAACAAATAGCAAATCACCCTCTGTCTAAAAGCTTCCCTTGG
TATTCCCCAAAGTTCTGATGATTTCCAGAACTTCTGTAAAGGCCTAGTTT
CAAACTTCTTACAGTAAGTACAAACAAAGATAACCAGTGAAAGGGAAATT
GTTGCCTTTTGAGGTTTGCCCATTCTTCAACACTCATAAGACCTTCCGGA
CTGATCTGAAGCTAACTTTCGACTACTGCTGTCCTGTCTCCTTCTACACC
CTCCAATCCTTAGCATCTGAATCTATCCTCCTTATTCAAACCATCAATTC
CCTTTTCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_k13.g1 MSMg01no264_k13.g1 CHROMAT_FILE:
MSMg01no264_k13.g1 PHD_FILE: MSMg01no264_k13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:54 2005
         (293 letters)



>mm_chr3_78963458_78964150
          Length = 693

 Score =  528 bits (273), Expect = e-154
 Identities = 288/293 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttatataaccgtggctgtactggaactcactgagcttttgacttaatgccattactat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 201 ctttatataaccgtggctgtactggaactcactgagcttttgacttaatggtattactat 260

                                                                       
Query: 61  ctagaatgaaaacagtttaagaaggtgtacagtcagacaatagccagcctcttggctcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctagaatgaaaacagtttaagaaggtgtacagtcagacaatagccagcctcttggctcct 320

                                                                       
Query: 121 taaaacaacccattgttgctagttgctgtttatctctgtgttataatgtgataggccctg 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaaacaacccatagttgctagttgctgtttatctctgtgttataatgtgataggccctg 380

                                                                       
Query: 181 actgacaagtaatcctgctgaaaggttagggctcttctgctctaatcaacagtagtgcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actgacaagtaatcctgctgaaaggttagggctcttctgctctaatcaacagtagtgcac 440

                                                                
Query: 241 gctaagtgtctaagttcactgcaaagaaaaacaaactgaagctctcaagtgct 293
           |||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 gctaagtgtcaaagttcactgcaaagaaaaccaaactgaagctctcaagtgct 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)