BAC Information

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BAC

Clone NameMSMg01-264L17
Chromosome3 (Build37)
Map Location 81,751,076 - 81,903,520
singlet/doubletdoublet
Overlap geneCtso, Tdo2, Accn5, Gucy1b3, Gucy1a3
Upstream geneEG626841, Pdgfc, LOC229443, LOC100041901
Downstream geneMtap9, Npy2r, LOC100041940, EG633285, Lrat, Fgg, Fga, Fgb, Plrg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264L17.T7 (MSMg01no264_l17.b1)MSMg01-264L17.TJ (MSMg01no264_l17.g1)
ACCAG406197AG406198
length726756
length of high quality
(start - end)		315 (45 - 359)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no264_l17.b1 PHD_FILE: MSMg01no264_l17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:00 2005CHROMAT_FILE: MSMg01no264_l17.g1 PHD_FILE: MSMg01no264_l17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,903,211 - 81,903,520)(81,751,076 - 81,751,366)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGGCTTTAAGGCTCATCTGCTTCCATGTGTTATAGATGAGGATATA
ACCAGAGGGAAACAAAACTACAGAATGCAGGTCTTCATCAGGATGCTTCA
CCTAGTGCATTGGTTTGAAAGATGGAGGGTTGGAATATGCCATCTTAAAT
GACTCTTGCTCATTTGCAGCAATTACTCAAAGTTATTTGTAAGAGTAAGA
AAAATCTTGGGCTGGAAAGGCGGCTCAGCAAGCCTGGTGAGTGCTATTCT
CAGCACTCAGAGGTAGGATGAGAGCCGACTCTCCAGAACTGTATTCTCAC
CGCCAGATTTTCTTTGCGGCCCTCCCCCTACCACTACTGGTACTTTTACT
ATGTAGACCAGGCTAGTCTCAAAACACATAGATCTACCTGCTTTTGCCTC
TGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTG
CCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCC
TCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTC
TCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTCTGCCTCTC
TGCCTCTCTGCCCCTGCCTCTTCCTCTCTACATCTGAAGTGTTGGGATTA
AGGGTATGAGCCACCACATCCATATA

CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGGGCCATTTAGTCCCACAAAT
GAGTAAAATGCACCTTTAGAATAACACGTCAGACAACAGAAGAGAGCAAC
TCGGGAATCTATTGTTAAATGCTTTTTGGGTTATTGTGCCATTGTGAAAA
CATCATCAGGAATAAAATAATTTATTTCAGACAAGGGCATAGAATATCTT
ATGGCTACTGTTGCTTGGACCCAGTGCCATCTACATGGGACATAATTGCA
ATCAGGGGTGAAATTAGATCTTTGAACAAAATATGGCCCTTTAAATAGAC
ATATAAGTTCCCAGAGCACGAAAGATTGCCCACACAGCTCCTGCTGCAAA
GGACGTGAAAATGGCCCTAACAACACACAGTCGAACCTTTCCTCCATGAC
TGGCTGCACAGGGCTCTGTCTATAAGGACCTTGGCCACTGTCTCCTTAGG
GAGTGAAGGCAATCCACTTCCTGGAGGGGAAAGTAAAGCTATTCGCAGGA
GAACCCAGACTTCCACATGTAAGTAATTGGAATCAAGGGAATAACTGTTC
CCAGGGAACATGATCGTAAGTGGATAATAGGGAAGAGACAGAAGAATAGT
TTCACCTGAATGAGTGGGGGTGGGGAGACTTGTGATGAATGAGGTTAGAG
AAAGATAACCCTCCCGTACCATATTATCCCCTAAAGGCATTTTCTGTATT
TATAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_l17.b1 MSMg01no264_l17.b1 CHROMAT_FILE:
MSMg01no264_l17.b1 PHD_FILE: MSMg01no264_l17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:00 2005
         (315 letters)



>mm_chr3_81903008_81903722
          Length = 715

 Score =  584 bits (302), Expect = e-171
 Identities = 308/310 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctggctttaaggctcatctgcttccatgtgttatagatgaggatataaccagag 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ggaattctggctttaaggctcatctgcttccatgtgttatagatgaggatataaccagag 454

                                                                       
Query: 64  ggaaacaaaactacagaatgcaggtcttcatcaggatgcttcacctagtgcattggtttg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ggaaacaaaactacagaatgcaggtcttcatcaggatgcttcacctagtgcattggtttg 394

                                                                       
Query: 124 aaagatggagggttggaatatgccatcttaaatgactcttgctcatttgcagcaattact 183
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 393 aaagatggagggttggaatatgccatcttaaatgactcttgctcatttgccgcaattact 334

                                                                       
Query: 184 caaagttatttgtaagagtaagaaaaatcttgggctggaaaggcggctcagcaagcctgg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 caaagttatttgtaagagtaagaaaaatcttgggctggaaaggcggctcagcaagcctgg 274

                                                                       
Query: 244 tgagtgctattctcagcactcagaggtaggatgagagccgactctccagaactgtattct 303
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 273 tgagtgctattctcagcactcagaggtaggaggagagccgactctccagaactgtattct 214

                     
Query: 304 caccgccaga 313
           ||||||||||
Sbjct: 213 caccgccaga 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no264_l17.g1 MSMg01no264_l17.g1 CHROMAT_FILE:
MSMg01no264_l17.g1 PHD_FILE: MSMg01no264_l17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:00 2005
         (291 letters)



>mm_chr3_81750876_81751566
          Length = 691

 Score =  532 bits (275), Expect = e-155
 Identities = 287/291 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgggccatttagtcccacaaatgagtaaaatgcacctttagaataacacgtcagacaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 201 tttgggccatttagtcccacaaatgagtaaaatgcacctttagaataagaagtcagacaa 260

                                                                       
Query: 61  cagaagagagcaactcgggaatctattgttaaatgctttttgggttattgtgccattgtg 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagaagagagcaactctggaatctattgttaaatgctttttgggttattgtgccattgtg 320

                                                                       
Query: 121 aaaacatcatcaggaataaaataatttatttcagacaagggcatagaatatcttatggct 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaacatcatcaggaataaaatcatttatttcagacaagggcatagaatatcttatggct 380

                                                                       
Query: 181 actgttgcttggacccagtgccatctacatgggacataattgcaatcaggggtgaaatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actgttgcttggacccagtgccatctacatgggacataattgcaatcaggggtgaaatta 440

                                                              
Query: 241 gatctttgaacaaaatatggccctttaaatagacatataagttcccagagc 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatctttgaacaaaatatggccctttaaatagacatataagttcccagagc 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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