BAC Information

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BAC

Clone NameMSMg01-265L06
Chromosome3 (Build37)
Map Location 127,387,384 - 127,387,675
singlet/doubletsinglet
Overlap geneAlpk1
Upstream geneCamk2d, Ank2, LOC100043749, LOC100043361, LOC100043364, Larp7, 4930422G04Rik, Neurog2
Downstream geneT2bp, BC002199, 5730508B09Rik, LOC100043382, EG668828
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265L06.T7 (MSMg01no265_l06.b1)MSMg01-265L06.TJ (MSMg01no265_l06.g1)
ACCAG406893AG406894
length855738
length of high quality
(start - end)
296 (101 - 396)---
definitionCHROMAT_FILE: MSMg01no265_l06.b1 PHD_FILE: MSMg01no265_l06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:17 2005CHROMAT_FILE: MSMg01no265_l06.g1 PHD_FILE: MSMg01no265_l06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGGACGTTTCTTTTTATTCTTTTTTTCTTTATATTACAGCACCGGTNNNG
GTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCTCATTTCATGTCCTATAGCCAACGACTCCATACCGCCA
TAACTATCTGCTTGTTATTATTCTGTGACTATGACGTTGGAGACACTTTT
GGACTGAACATCACCAGGACTGAGAGAACATCATAGTCTAAGACTTGAGG
ATGAATCGAAACATGGCTACTTTGAAGTTGGGCTCTACTGGGTTATCGGT
GTTAATTTATCTAAATAACAGGCCTGAACAATTGGTACAGGAAGAGATTT
CATAGTATTCTCTGTCTGTGTTGTAAAGAAGGATAGGCCTCACATCAATG
ACAGATCTCTGGGAAACTTTATTTTTTCTATCCCCCCCCCCCACAGTCCC
AAAATTATAGAGAATGATTTTGCCCCCCCCCTAGCAAAAAAATGAATCTT
AGTTTCCTAAAGATGCTGCCACATTCTACATTTAATGGAAGTTTCTCCTC
GATAGACTCTTGGAAAAGGTTTTTACACATAAAATTTGTGTCTTATGTTG
TCACAGTAACAATGTGATGGCTCTTAAATGCGACATGATTCTCCCATCTG
TACCTTTATACCTTAATCTCCTCCTTGCCAGGTTTAATTGATTATTTCCT
CCACTTCCTTTCATTATATTATGTCCTATTCCCCCCCCTCAGCTAACGAC
TCTTCTCTATTTGTTTTCTTGTTACATTGATGATATTCGTCAATATCTAT
AATTAAATAAGCATCCCATACATGACATATAAAATATATGAAGTCATCTA
TTATT
TCTCCCCGCCCGGCCCCCGTTTTTTTCCCTTACTCGCCGGCCCCGGGGGG
GGTTTTAGGCTATCGTTTTTCCTTTCCCGCTGCTTTTCTCTGGCGGCGGG
GGTTTATTTTGCCGCCTCGTTCTGCTTGCGGCCCCTGCGTTAGTGAGCGG
GGGGGCTCAGCGCTGTCGGGGCGGCTAGCGTGCGCCCCCGAGCGATTGCT
TTTTTTTATATCTTCCGCCCCCTCCTCTCCCCCCCTCCCCCTTTTCCCCG
TTACATTACGTTAAGCGGGCCATCTTCCCCCGCTTTCCCCTTTTTCCCCC
CCCCCCCTGTTCTCCCGTCGGTCCCCCTCTGCCCGCGTGGCCCTCCCTCT
TGTCGTTGCCCGTTCCCCCNCCCCCNACACNNNNNNACGGGGGGGGCGGT
CTCNTCCTGGGGGGCTGGCCCGCCCCCTTTTCGCNTTCTGGGGCGGTGGC
GGGGGGGGTGGGCGCCGCCGTATGTTTTTCTATCCCCGCNCCCCGCTNNN
CCTCTGCTTCTTTTNNNNNCCCTGTTAAGACTAGATGCGTAGGNCTTGGC
CGGCCCGGTCCGTGTCCGTTCGCACANTTNAGGGGGGAACCCTTATTAGG
AAGGTGTTCCGCCGTGGAAATNTTTCCCGGGCCTGTTTGTTGTTTACCGG
GGAAAAAGGGTGGGGCTCTCCTCCTTGGGGGCCCTTGGGGGGTTTTTTTC
TCGGGGGAAGGCCCTTTTGTGGTGCCCCGGGGGTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_l06.b1 MSMg01no265_l06.b1 CHROMAT_FILE:
MSMg01no265_l06.b1 PHD_FILE: MSMg01no265_l06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:17 2005
         (296 letters)



>mm_chr3_127387181_127387875
          Length = 695

 Score =  520 bits (269), Expect = e-152
 Identities = 287/293 (97%), Gaps = 1/293 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctctcatttcatgtcctatagccaacgactccataccgccataactatctgctt 63
           ||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||
Sbjct: 204 ggaattctctcatttcatgtcctatagtcaacaactccataccgccataactaactgctt 263

                                                                       
Query: 64  gttattattctgtgactatgacgttggagacacttttggactgaacatcaccaggactga 123
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gttattatcctgtgactatgacgttggagacacttttggactgaacatcaccaggactga 323

                                                                       
Query: 124 gagaacatcatagtctaagacttgaggatgaatcgaaacatggctactttgaagttgggc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gagaacatcatagtctaagacttgaggatgaatcgaaacatggctactttgaagttgggc 383

                                                                       
Query: 184 tctactgggttatcggtgttaatttatctaaataacaggcctgaacaattggtacaggaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tctactgggttatcggtgttaatttatctaaataacaggcctgaacaattggtacaggaa 443

                                                                
Query: 244 gagatttcatagtattctctgtctgtgttgtaaagaaggataggcctcacatc 296
           |||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 444 gagatt-catagtattctctgtctatgttgtaaagaaggataggcctcacatc 495


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 695
Length adjustment: 9
Effective length of query: 287
Effective length of database: 686
Effective search space:   196882
Effective search space used:   196882
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)