BAC Information

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BAC

Clone NameMSMg01-266K04
Chromosome3 (Build37)
Map Location 153,630,405 - 153,801,443
singlet/doubletdoublet
Overlap geneSlc44a5, LOC100040980
Upstream geneSt6galnac5, LOC100040750, St6galnac3, EG545578, Asb17, Msh4, Rabggtb, Acadm
Downstream geneLhx8, LOC100040810, LOC100040829, Tyw3, Cryz, BC007180, Tnni3k, Fpgt, Lrrc44
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266K04.T7 (MSMg01no266_k04.b1)MSMg01-266K04.TJ (MSMg01no266_k04.g1)
ACCAG407567AG407568
length734738
length of high quality
(start - end)
320 (46 - 365)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no266_k04.b1 PHD_FILE: MSMg01no266_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:28 2005CHROMAT_FILE: MSMg01no266_k04.g1 PHD_FILE: MSMg01no266_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(153,630,405 - 153,630,720)(153,801,155 - 153,801,443)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTACACAGCTCAGGCTGTTCTCGAACTCATGGCAGTCTTCCAGC
CCCGTTCCTCTGTAAGGAGTGAAAATGACTAAAGGTTCATCTTCAGAACA
AGAGTGGTTTCAGTCAGCTTCAGTCTAACTTTGGGTGAACAGACTCTCCT
GGGTCCCTGCTAACTCCTGCTCATTCAGCTCCATCAAACCAAACCATAAG
CCTGGAGTAGAGAATGATTAACAGCCAAGGTTGTCTGACGTCCTGCAGAT
ATAACAAGGCTGTGTGCCTGAGAAGCTTCTGAGTAAAGAAACCATACAAC
CAGAGATAAAGCTATTTTCATTCTCTCGCCCCCCCACAGCCAAACTAGAC
AACCATTAGTGTCAGAGGGCAAGATAAGGCCCAAACAACCTGTAAGATCA
CCCCGTTCTGATTTTCCAGACAAGGAAGAGAGAAAACAACCTATATTTGG
GGTTATAAAACCGCTCTCTCCTCAGCCAGTACCCATGCCATCTCCGGCTG
GTACATACTTTGCAAAACTTGTTAGGTGAACATTCTCAGGTTAGCTGCTC
TGTCTCCAGCGCCCCTGTTGACTATGGAGTGGGGGTCCTCACAGCCTCAC
TTTAGCTTCTCTGTCTCTAGAGCTTGTGTTGATTATGGAGTTGGGGTCCT
CACAGCCTCACTTTAGCCTCTCTGTCTCCAGAGN
ACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTGTTGCTCAGACTTCCAGTGAC
ACGTTAGCCTCTGAAAATCTTACGAGGATGGAGATTCTGACTCGGTTAAT
TTGGGACAGGCCTTGAGATCTGTATTTCATAGGCTGGAAGCTACCCAGCT
GACAATATCCAAACCCACACTTCGAGTACAAGTCCCAGGTCTATACGGCC
AATTATGATGATAGCCAGCTTGTCACATAAAGGACTGAGATACTCCCAGG
GTCTTCACAGTCTGACCGTGGAGATCACTGTTGGAAAGAGATTTGAACGG
AACTCCTTGCATGCCTTAGTCCTAAACTAACATGGAAATTGGAAGATGCA
TGGAGGGGAGTAGAGTCACATAATCATGGTGGCTGTGGGATGCTCTTCCT
GGTGGAAATATTTACAGTTCCACAGTGAGAGACTTCAATTCAAAGAAAAG
CCAAAAAAGGATACCTTTCTCTGAATGAACATTTAGTTATCCCCAGATTT
GGGGGGAAAAGACATATCTATGACTGGAGAAACTATCATGGAGGATTCTT
AGACTAACATAGATTGACTCACCCACATCTTGATCCTCAGACTCTGTTAT
TTCTAGGANAAAGCACAAAGGGCAAACAAATATTTATGTTCAGAGCTTAA
TGGCTAGTACTCTACACCACCTCTCCTGCCCTAAGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_k04.b1 MSMg01no266_k04.b1 CHROMAT_FILE:
MSMg01no266_k04.b1 PHD_FILE: MSMg01no266_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:28 2005
         (320 letters)



>mm_chr3_153630202_153630921
          Length = 720

 Score =  580 bits (300), Expect = e-170
 Identities = 312/316 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactacacagctcaggctgttctcgaactcatggcagtcttccagccccgttcc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactacacagctcaggctgttctcgaactcatggcagtcttccagccccgttcc 263

                                                                       
Query: 64  tctgtaaggagtgaaaatgactaaaggttcatcttcagaacaagagtggtttcagtcagc 123
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tctgtaaggagtgaaaataactaaaggttcatcttcagaacaagagtggtttcagtcagc 323

                                                                       
Query: 124 ttcagtctaactttgggtgaacagactctcctgggtccctgctaactcctgctcattcag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttcagtctaactttgggtgaacagactctcctgggtccctgctaactcctgctcattcag 383

                                                                       
Query: 184 ctccatcaaaccaaaccataagcctggagtagagaatgattaacagccaaggttgtctga 243
           |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctccatcaaaccaagccagaagcctggagtagagaatgattaacagccaaggttgtctga 443

                                                                       
Query: 244 cgtcctgcagatataacaaggctgtgtgcctgagaagcttctgagtaaagaaaccataca 303
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cgacctgcagatataacaaggctgtgtgcctgagaagcttctgagtaaagaaaccataca 503

                           
Query: 304 accagagataaagcta 319
           ||||||||||||||||
Sbjct: 504 accagagataaagcta 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no266_k04.g1 MSMg01no266_k04.g1 CHROMAT_FILE:
MSMg01no266_k04.g1 PHD_FILE: MSMg01no266_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:28 2005
         (292 letters)



>mm_chr3_153800955_153801646
          Length = 692

 Score =  497 bits (257), Expect = e-145
 Identities = 281/289 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgttgctcagacttccagtgacacgttagcctctgaaaatcttacgaggatggagatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 489 agtgttgctcagacttccagtgacacgttagcctctgaaaatcttacgaggatggaggtt 430

                                                                       
Query: 61  ctgactcggttaatttgggacaggccttgagatctgtatttcataggctggaagctaccc 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 429 ctgactcggttaatttgggacaggctttgagatctgtatttcataggctggaagccaccc 370

                                                                       
Query: 121 agctgacaatatccaaacccacacttcgagtacaagtcccaggtctatacggccaattat 180
           |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 369 agctgacaatatccaaacccacacttcgagtacaagtcccaggtctatgcagccaattat 310

                                                                       
Query: 181 gatgatagccagcttgtcacataaaggactgagatactcccagggtcttcacagtctgac 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gatgatagccagcttgtcacacaaaggactgagatactcccagggtcttcacagtctgac 250

                                                            
Query: 241 cgtggagatcactgttggaaagagatttgaacggaactccttgcatgcc 289
            ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 249 ggtggagatcactgttggaaagagatttgaacagaactccttgcatgcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)