BAC Information

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BAC

Clone NameMSMg01-266P10
Chromosome3 (Build37)
Map Location 140,733,226 - 140,906,954
singlet/doubletdoublet
Overlap genePdha2
Upstream geneLOC229883, LOC621343, 4930590L14Rik
Downstream geneUnc5c, LOC100039923, Bmpr1b, Gabarapl2-ps3, Pdlim5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266P10.T7 (MSMg01no266_p10.b1)MSMg01-266P10.TJ (MSMg01no266_p10.g1)
ACCAG407813AG407814
length743740
length of high quality
(start - end)		318 (45 - 362)352 (386 - 737)
definitionCHROMAT_FILE: MSMg01no266_p10.b1 PHD_FILE: MSMg01no266_p10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:53 2005CHROMAT_FILE: MSMg01no266_p10.g1 PHD_FILE: MSMg01no266_p10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,733,226 - 140,733,538)(140,906,603 - 140,906,954)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCGTATTTTTGATACTCAGGTTTTAATTTTTATCCCTTTATTTACAAT
TATCTAACTTTATTCCAAAATGATTTCTTGGATCTGGATACAATATTTGT
TTTCTTACAACAATTTGTTTTCTTCTTTCTGATTTGTATTAGTGATTGAG
CCTTCCTGATTAGGATTCCCAGGGACAAGATCTACCCACTGAAATACAAG
AACTCTCCTTACTAGCAGATTAAAAAATAAAACAAAACAAAGCAAAAACC
ACAATGAGTAAGGAAGACAAGAAAAGAGAGAGAGAAAGAGGAAGAAACAA
AGCATGACTATTTTTTTATTATCCCCCCCCCCTCTAGCAAACCTAAAGAT
ATAAAGATAAGAAAATCCCCACATGAAAATTTCAAAAGAATTCTAGTAAA
AATGATAAAATAACATTAAATATGAAAGAAAATGGCAAACAAATCTATTC
CAAGGTCTTGAGAGTAAAGGTCGCAGGATAAAGGGAAAAGTCTACAACTT
ATGTGATAAAATCAGCAGGGGGTTGAAATCAGAAACAATTAGGCACAGAA
ATCTATATTTTGAAAAATAGGAAGCTAACATTTAAAAAGAGACAATTAAT
TAAACAAAGGTACATTGGAAAAGACTGACTAGTCCAAAAGACCAGATAGA
AGAAGACATGACAGANNAGAAAGGTTGAAAATTCCTACCTCAA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAATACATAAAGAATTCTCAATG
GTTTGCACACGGCCAACCTAGATTTTTCTTTGGTTAGTTGCTTATCTTTA
AGTCACTTGGTTAGCTAGAACAGGATAATATTCCTGGACTAGCAGTTATA
TTAGAAAAACCTAGGAATTTTCTTTATGTTGATACTTTATAGCACTCAAT
ATTAGTCACCCAGAGAGGAACTCTGTGGCTTGATCAGGGTTTCCTTTGCA
GTGACATTTGCTCAATATACCTTTTCATGGCAATAATTGAAAAAAGTCAA
AATGGTGTGAGGTGTTTTATGTCCTCATCCCCACCAAGCAATATAAATGG
AATTCATAAGGGCTCAGTGACTCACAAGACAGGTTAATTAAAGCCACTAG
GTGGCAAGTAGAAGTTGGCACAAAATGTGCTTGTCTCTGTCTTTTTGTAA
TTGCACAGAGTGCATCCTTTATTAGAATATCTACTAGAGGCTTGCTATAG
TATTATTCTGTTGTTGCCATTTCAGGCTGTTTAATATACTTGTGATTCTG
AGAAAGAAATGCTTTATGGGATAGCCTTTAATGTGTTCAATGAAGTTTCA
TATAACAATTCAATGAGAACTATATGGCACAGATGTATCCCTAAGTGTAT
CTTGATTGTCCTGTGAATCTCATAGCCTAAAAGAAAATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_p10.b1 MSMg01no266_p10.b1 CHROMAT_FILE:
MSMg01no266_p10.b1 PHD_FILE: MSMg01no266_p10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:53 2005
         (318 letters)



>mm_chr3_140733022_140733739
          Length = 718

 Score =  590 bits (305), Expect = e-173
 Identities = 311/313 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcgtatttttgatactcaggttttaatttttatccctttatttacaattatctaac 64
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttatttttgatactcaggttttaatttttatccctttatttacaattatctaac 264

                                                                       
Query: 65  tttattccaaaatgatttcttggatctggatacaatatttgttttcttacaacaatttgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttattccaaaatgatttcttggatctggatacaatatttgttttcttacaacaatttgt 324

                                                                       
Query: 125 tttcttctttctgatttgtattagtgattgagccttcctgattaggattcccagggacaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttcttctttctgatttgtattagtgattgagccttcctgattaggattcccagggacaa 384

                                                                       
Query: 185 gatctacccactgaaatacaagaactctccttactagcagattaaaaaataaaacaaaac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 385 gatctacccactgaaatacaagaactctccttactagcagattaaaaaacaaaacaaaac 444

                                                                       
Query: 245 aaagcaaaaaccacaatgagtaaggaagacaagaaaagagagagagaaagaggaagaaac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaagcaaaaaccacaatgagtaaggaagacaagaaaagagagagagaaagaggaagaaac 504

                        
Query: 305 aaagcatgactat 317
           |||||||||||||
Sbjct: 505 aaagcatgactat 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no266_p10.g1 MSMg01no266_p10.g1 CHROMAT_FILE:
MSMg01no266_p10.g1 PHD_FILE: MSMg01no266_p10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:54 2005
         (352 letters)



>mm_chr3_140906403_140907154
          Length = 752

 Score =  658 bits (340), Expect = 0.0
 Identities = 349/352 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagcaatataaatggaattcataagggctcagtgactcacaagacaggttaattaaagcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 aagcaatataaatggaattcataagggctcagtgactcacaagacaggttaattaaagcc 493

                                                                       
Query: 61  actaggtggcaagtagaagttggcacaaaatgtgcttgtctctgtctttttgtaattgca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 492 actaggtggcaagtagaagttggcacaaaatgtgcttgtctctgtctttttgtaattaca 433

                                                                       
Query: 121 cagagtgcatcctttattagaatatctactagaggcttgctatagtattattctgttgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 cagagtgcatcctttattagaatatctactagaggcttgctatagtattattctgttgtt 373

                                                                       
Query: 181 gccatttcaggctgtttaatatacttgtgattctgagaaagaaatgctttatgggatagc 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 372 gccatttcaggctgtttaatatacttctgattctgagaaagaaatgctttatgggatagc 313

                                                                       
Query: 241 ctttaatgtgttcaatgaagtttcatataacaattcaatgagaactatatggcacagatg 300
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 312 ctttaatgtgttcaatgaagttttatataacaattcaatgagaactatatggcacagatg 253

                                                               
Query: 301 tatccctaagtgtatcttgattgtcctgtgaatctcatagcctaaaagaaaa 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tatccctaagtgtatcttgattgtcctgtgaatctcatagcctaaaagaaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 752
Length adjustment: 9
Effective length of query: 343
Effective length of database: 743
Effective search space:   254849
Effective search space used:   254849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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