BAC Information

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BAC

Clone NameMSMg01-267E24
Chromosome3 (Build37)
Map Location 89,799,805 - 89,800,048
singlet/doubletsinglet
Overlap geneHax1
Upstream geneAsh1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102
Downstream geneUbap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b, Gatad2b, Slc27a3, Ints3, Npr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16, EG628324, S100a3, S100a4, S100a5, S100a6, S100a7a, S100a8, S100a9, LOC668165, LOC383949, Pglyrp4, LOC329706, EG545541, LOC635737, EG668174
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-267E24.T7 (MSMg01no267_e24.b1)MSMg01-267E24.TJ (MSMg01no267_e24.g1)
ACCAG408068AG408069
length753744
length of high quality
(start - end)		244 (458 - 701)284 (459 - 742)
definitionCHROMAT_FILE: MSMg01no267_e24.b1 PHD_FILE: MSMg01no267_e24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:20 2005CHROMAT_FILE: MSMg01no267_e24.g1 PHD_FILE: MSMg01no267_e24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:20 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGAAATTCTTTCCTGCAATTTTAAGATTCGTTCTTAGCCGGGCG
TGGTGGCACACGCCTTTAATCCCAGCCCTCGGGAGGCAAAGGCAGGTGGA
TTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCC
AGAGCTATACAGAGAAACCCTGTCTGGGAAAAAAAAAAAAGATTGGAAGG
TGTTTTTTCACTGATTGTGTGTGGCTTCTTCTACAGTTGGATGATACATG
GCCTGTGAGTCCCCATTCTAGAGCCATTTATGACAAAGGTAAGTCTAGAA
GGAGGCACATTTACCATANATGNCNCCTCAAGNCCCCTNCCAAGGTTCTT
CCTGAAAAANGTATCTAATTACCTGCCCTCCAATCTATCTGAATTGTCGT
CTCTCTGCCCTTCCAGATCTTGACTCCCAGGTTTCCCAGGAAGGTCTGGG
TCCACTTCTTCAACCCCAGCCCAAATCGTATTTCAAAAGTATCTCTGTGA
CCAAGATCACTAAGCCAGATGGGGTGAGTTGAGAGGAAGAAGTATAATCC
TCTGGGGAAAGGGACCAGTATAAGAAAATACTAAACTCAGCATAGTGCTG
TTAGCAATATATTGGGATTTCTCTTGCAGACAGTGGAGGAACGCCGCACT
GTGGTAGACAGTGAGGGCCGGAGGGAGACCACAGTGACCCATCAAGAAGC
CCT

CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGACATAGCTAAGCCTTCGCCAGTG
TTCCAACGTCCCAGAAAATCCTTGAACCGGACAAACTTGGAATTCAGTAG
GAATTCAGTAAGAAGGTTACCTATTCTGTAACATTCAAATTTACTCCTAG
TAGAGATGGTGAAACTAATTAGGCATTACAAAGAACAGAGCTAGAATAGC
TCCAGGGCTGGTCTGCAGGGTGATTACTTAGGACAGTAGCCAGTCTCATC
CAGACAAGGGAATACACAATGGCCTATCTAATAGGTGGGTTTAACATGTA
AGAGTTAGGGACTTTCCTTGAATTGCCATNTTCANTACCGCCAGGTATAG
CAGGNTACACTGGATGTTAGAAGCAAGTTGGAAAATAACAATCTGACNAA
TGGAGATTCTCCACAGATACTTAAAACAACAGCCAAGTTAAACTGATACA
AGAATTTATCAAGGCCTAGGAAATAGGGGGGTTGTGATATTGCATTATTC
ATGAGAAGGTCTGCTATAGCAGAACCCCCTGGTGCTAGCTTTCACAAGGC
TCAAAGGAGTAGCACAAATTGTGACTAGGGTGTGAAATCCTTACCTGTCA
TTAGCTGACCCTAGACAGGGCTGTTTTATCTTTACTGTAAACATTACCTG
GTTCCTGGAAGTCCTTTTGAAGTCATTCCTTTGTTTTGTGTCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no267_e24.b1 MSMg01no267_e24.b1 CHROMAT_FILE:
MSMg01no267_e24.b1 PHD_FILE: MSMg01no267_e24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:20 2005
         (244 letters)



>mm_chr3_89799605_89800248
          Length = 644

 Score =  472 bits (244), Expect = e-138
 Identities = 244/244 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccttccagatcttgactcccaggtttcccaggaaggtctgggtccacttcttcaacccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cccttccagatcttgactcccaggtttcccaggaaggtctgggtccacttcttcaacccc 385

                                                                       
Query: 61  agcccaaatcgtatttcaaaagtatctctgtgaccaagatcactaagccagatggggtga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agcccaaatcgtatttcaaaagtatctctgtgaccaagatcactaagccagatggggtga 325

                                                                       
Query: 121 gttgagaggaagaagtataatcctctggggaaagggaccagtataagaaaatactaaact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gttgagaggaagaagtataatcctctggggaaagggaccagtataagaaaatactaaact 265

                                                                       
Query: 181 cagcatagtgctgttagcaatatattgggatttctcttgcagacagtggaggaacgccgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cagcatagtgctgttagcaatatattgggatttctcttgcagacagtggaggaacgccgc 205

               
Query: 241 actg 244
           ||||
Sbjct: 204 actg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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