BAC Information

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BAC

Clone NameMSMg01-268C01
Chromosome3 (Build37)
Map Location 91,908,064 - 91,908,380
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042463, Pglyrp3, EG619750, Lor
Downstream geneA030004J04Rik, Sprr2a, LOC100042999, LOC545543, LOC100043005, LOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268C01.T7 (MSMg01no268_c01.b1)MSMg01-268C01.TJ (MSMg01no268_c01.g1)
ACCAG408654AG408655
length735734
length of high quality
(start - end)
321 (46 - 366)659 (76 - 734)
definitionCHROMAT_FILE: MSMg01no268_c01.b1 PHD_FILE: MSMg01no268_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:21 2005CHROMAT_FILE: MSMg01no268_c01.g1 PHD_FILE: MSMg01no268_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAACATGTGGTTACTCCCATCTCACAGCTGAGTATGTGCAGTAAGA
AAATGCTGCTACCTTCACCGGACTCCAGTGTCTTCCAAGTTCTGTTGCAG
TTTGGCCAACATCTTTAGAAGTCAGAGAGAATTGAGGCTGTTTTTCTGCC
GTGATCCAGAGTCTCCCTGTACAGGTGTGGAAAGCAGACCCTGTGAGCAT
ATGTTGCTCTTTATCCATGGAGGACTTATTTTGCGGATGAGTCAACTATG
AGCCCTGCTTGGGGACTGAGGGATGAATAAGTGCTTTGGGGGTTGGAGGG
ACCCAGGAGAACAAAAGTGTTTTTACTTCCTCCCACCATTAACCCTTCTT
TTAGGATGACAGCAGTATGCAAGACTTGAGTCTTCTCAAGGGGGCCAATG
ACCTCCTGCTTTCATCACACTGGATAGGCCAGATCAGCAGGACTCTATCC
ATCACCCATTGTGGAAACCTGCTCCCTCCCAATGAGGCCTCTCTCTGCTT
GTGAAGCTCATCAGGTTTAGCAACCTGGCCTCTCCCATGGGCTGCCTTTC
TAGTTCTCTCTGACAAGATGAAGGGGTTTCTTACCTGCTCAGCTGGGAGG
ATAGATGGGTGGAGGGGACTGTAGTGAAACAGGTGGCCCCACCTGGCTCT
GCAAGGCTTTTTGCCACATGGGGCCCATGGGTCTT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGACTTTTATCAT
GAATGGGTGTTGGATCTTGTTGAATGCTTTTTCCGCATCTAACAAGATGA
TAATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATG
GATTTTCATATATTAAGCCATCCCTGCATCCCTGGAATAAAACCTACTTG
GTCAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAA
TTTTATTGAGGATGTTTACATCGATATTCATAAGGGAAATTGGTCTGAAG
TTCTATATCTTTGTTGGATCTTTCTGTGGCTTAGGTATCCGAGTAATTGT
GGCTTCATAGAATGAGTTGGGTAGAGTTCCCTCTACTTCTATTTTGTGGA
ATAGTTTGTGCAGAACTGGGATTAGATCTTCTTTGAAGGTCTGGTAGAAC
TCTGCACTAAACCCATTTGGTCCTGGGCTTTCTTTCGCTGGGAGACTACT
AATGACTGCTTCTATTTCTTTTGGGGATATGGGACTGTTTAGAAGGTCAA
CTTGATCCTGATTTAACTTTGGTACCTGGTATCTGTCTAGAAATTTGTCC
ATTTCTTCCAGGTCTTCCAGTTTTGTTGAGTATAGCCTTTTGTAGAAGGA
TCTGATGGTGTTTTGGATTTCTTCAGGATCTGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_c01.b1 MSMg01no268_c01.b1 CHROMAT_FILE:
MSMg01no268_c01.b1 PHD_FILE: MSMg01no268_c01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:21 2005
         (321 letters)



>mm_chr3_91907860_91908580
          Length = 721

 Score =  605 bits (313), Expect = e-178
 Identities = 316/317 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaacatgtggttactcccatctcacagctgagtatgtgcagtaagaaaatgctgc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaacatgtggttactcccatctcacagctgagtatgtgcagtaagaaaatgctgc 264

                                                                       
Query: 65  taccttcaccggactccagtgtcttccaagttctgttgcagtttggccaacatctttaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taccttcaccggactccagtgtcttccaagttctgttgcagtttggccaacatctttaga 324

                                                                       
Query: 125 agtcagagagaattgaggctgtttttctgccgtgatccagagtctccctgtacaggtgtg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agtcagagagaattgaggctgtttttctgccgtgatccagagtctccctgtacaggtgtg 384

                                                                       
Query: 185 gaaagcagaccctgtgagcatatgttgctctttatccatggaggacttattttgcggatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaaagcagaccctgtgagcatatgttgctctttatccatggaggacttattttgcggatg 444

                                                                       
Query: 245 agtcaactatgagccctgcttggggactgagggatgaataagtgctttgggggttggagg 304
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agtgaactatgagccctgcttggggactgagggatgaataagtgctttgggggttggagg 504

                            
Query: 305 gacccaggagaacaaaa 321
           |||||||||||||||||
Sbjct: 505 gacccaggagaacaaaa 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)