Query= MSMg01no268_f01.b1 MSMg01no268_f01.b1 CHROMAT_FILE:
MSMg01no268_f01.b1 PHD_FILE: MSMg01no268_f01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:34 2005
(320 letters)
>mm_chr3_55209631_55210350
Length = 720
Score = 584 bits (302), Expect = e-171
Identities = 311/314 (99%)
Strand = Plus / Plus
Query: 5 gaattcccctgaaagctcgataagctggtcctttaactcagtatagtatcccaagcgcac 64
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 205 gaattcccctgaaagctcgataagctggtcctttaactcagtatagtatcccaagcacac 264
Query: 65 agtgacatcaactggatgtaggataagagcacaaatgtgacaagttatttacctatgcta 124
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 265 agtgacatcaactggatgtaggataagagcacaaatgtgacaatttatttacctatgcta 324
Query: 125 aagtagtgaatttatgaatgtgagaaatttggagtatagcctggtgtcacttaatataaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagtagtgaatttatgaatgtgagaaatttggagtatagcctggtgtcacttaatataaa 384
Query: 185 ttgttaccattatcatctccattgtctttattcccaacccaccgaaccaccccagtgttc 244
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttgttaccattatcatcttcattgtctttattcccaacccaccgaaccaccccagtgttc 444
Query: 245 cctgtcatattcttccccaagcttaacatccctgttttattagacgtacggtatactgta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cctgtcatattcttccccaagcttaacatccctgttttattagacgtacggtatactgta 504
Query: 305 ggatgtagttattt 318
||||||||||||||
Sbjct: 505 ggatgtagttattt 518
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space: 221121
Effective search space used: 221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no268_f01.g1 MSMg01no268_f01.g1 CHROMAT_FILE:
MSMg01no268_f01.g1 PHD_FILE: MSMg01no268_f01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:34 2005
(636 letters)
>mm_chr3_55380504_55381539
Length = 1036
Score = 1004 bits (519), Expect = 0.0
Identities = 605/641 (94%), Gaps = 17/641 (2%)
Strand = Plus / Minus
Query: 1 tcctgcactgaaggaggagcaatccccaacaggtgagcacagaggtggcagtggggccac 60
||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 802 tcctgcactgaagaaggagcaatccccaacaggtgagcacagaggtgggggtggggccac 743
Query: 61 caggtctttgaaggggggactggcatgtgggtctttcttttttcctttctcttctaaagg 120
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 742 caggtctttgaaggggagactggcatgtgggtctttcttttttcttttctcttctaaagg 683
Query: 121 taaatgatgtgtatcattttccttcaatgcctaaacattgggatgttagattcctgtgtt 180
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 682 taaatgatgtttatcattttccttcgatgcctaaacattgggatgttagattcctgtgtt 623
Query: 181 tgggtttcagtacatggacttcag-agccggaatggattttgtgttgtgtcaaatcctaa 239
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 622 tggg--tcagtacatggacttcagaagccggaatggattttgtgttgtgtcaaatcctaa 565
Query: 240 ataccgcagccgcctagtcctaggccacttgactttcatcggccttcgg----tccatgt 295
||||||||||||||||||||| ||||||||||||||||||||||||||| | |||
Sbjct: 564 ataccgcagccgcctagtccttggccacttgactttcatcggccttcgggagtt---tgt 508
Query: 296 ttgcatgggttgcttccttcataaaaatcagctgatcatattttcttaatgaacatgatg 355
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 507 ttgcatgggttgcttccttcataaaaatcagctgatcatattttcttagtgaacatgatg 448
Query: 356 atgaaagacaaatatacaggctaagttcattgctatgttcatgatttcctttgattttaa 415
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 447 atgaaagacaaatatacaggctaagttcattgctatattcatgatttcctttgattttaa 388
Query: 416 gagagaatagaaccatttgcagccctcctcccacccctgctgggtttcacactcggcctg 475
|||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 387 gagaaaatagaaccatttgcagcccccctcccacccctgctgggttccacactcggcctg 328
Query: 476 gcccacctaatggctctttggcccccacatctagcctgctgcaggctgagctgctattgc 535
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gcccacctaatggctctgtggcccccacatctagcctgctgcaggctgagctgctattgc 268
Query: 536 atcttgtatatcaccttcatggcttctgctggaagctagtctttggtgtttctccatccc 595
||||||||||||||| |||||||||||| ||||||||||||| || ||||||||||||||
Sbjct: 267 atcttgtatatcaccctcatggcttctgttggaagctagtctctgttgtttctccatccc 208
Query: 596 tctttcctgttccctgggaaagcatttgacaagccaggttg 636
||||||| |||||||||||||| ||| |||||||||
Sbjct: 207 tctttcc------ctgggaaagcatttaaca-gccaggttg 174
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space: 642276
Effective search space used: 642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
