Query= MSMg01no268_k20.b1 MSMg01no268_k20.b1 CHROMAT_FILE:
MSMg01no268_k20.b1 PHD_FILE: MSMg01no268_k20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:00 2005
(317 letters)
>mm_chr3_129301934_129302650
Length = 717
Score = 540 bits (279), Expect = e-158
Identities = 301/313 (96%), Gaps = 8/313 (2%)
Strand = Plus / Plus
Query: 5 gaattcagccatcactggaacatcaagaatacaacctgagaacttgcctcaagaaaacat 64
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 213 gaattcagccatcactggaacatcaagaatacaacctgagaacttgcctcaagaaaccat 272
Query: 65 tgtttttatcttcttatctaattgaaaacatagacagctaaactgcgtgtggtccccttc 124
||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 273 cgtttttatcttcttatctaattggaaacatagaca--------gcgtgtggtccccttc 324
Query: 125 acttcccaagaccccaaccttccaaactctactttccagattggcaccacagcttgggtc 184
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 325 acttcccaagaccccaaccttccaaactctactttccagattggcaccatagcttgggtc 384
Query: 185 aacatctgaactagagacatcttggattcccttgtagtgcaagccctgtctttttgtttt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aacatctgaactagagacatcttggattcccttgtagtgcaagccctgtctttttgtttt 444
Query: 245 gtttcgattgttcctcttttgagacagggtcctggctgtcctggaactcattctgtagac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtttcgattgttcctcttttgagacagggtcctggctgtcctggaactcattctgtagac 504
Query: 305 caggctggccttg 317
|||||||||||||
Sbjct: 505 caggctggccttg 517
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space: 218064
Effective search space used: 218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no268_k20.g1 MSMg01no268_k20.g1 CHROMAT_FILE:
MSMg01no268_k20.g1 PHD_FILE: MSMg01no268_k20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:00 2005
(286 letters)
>mm_chr3_129447636_129448319
Length = 684
Score = 306 bits (158), Expect = 1e-87
Identities = 183/192 (95%), Gaps = 2/192 (1%)
Strand = Plus / Minus
Query: 95 gtgataatcaaagtcacttggtgtctacttaagtactgtcgctgtgaaaagagagacggg 154
||||| ||||||||||||||||| | ||||||||||||||||||||||| |||||||||
Sbjct: 484 gtgattatcaaagtcacttggtgcccacttaagtactgtcgctgtgaaa--agagacggg 427
Query: 155 gtgatcgcagcataaaataaaactgttctgcattccgtacaagccaagctaggctcgcct 214
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 426 gtgatcgcagcataaaataaaactgttctgcactccgtacaagccaagctaggctctcct 367
Query: 215 ttaagccggtcccctaggaggggtggtcagtgaccatgtgtggggggttgggtggttgct 274
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 366 ttaagccggtcccctaggaggggtggtcagtgaccatgtgtggggatttgggtggttgct 307
Query: 275 aggctccgcttc 286
||||||||||||
Sbjct: 306 aggctccgcttc 295
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 684
Length adjustment: 9
Effective length of query: 277
Effective length of database: 675
Effective search space: 186975
Effective search space used: 186975
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
