BAC Information

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BAC

Clone NameMSMg01-269H07
Chromosome3 (Build37)
Map Location 4,582,901 - 4,583,216
singlet/doubletsinglet
Overlap genenone
Upstream geneHnf4g, EG383815, LOC100039157, LOC100039167, LOC667709
Downstream geneLOC620283, Zfhx4, Pxmp3, EG620382
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-269H07.T7 (MSMg01no269_h07.b1)MSMg01-269H07.TJ (MSMg01no269_h07.g1)
ACCAG409565AG409566
length736733
length of high quality
(start - end)
319 (41 - 359)285 (70 - 354)
definitionCHROMAT_FILE: MSMg01no269_h07.b1 PHD_FILE: MSMg01no269_h07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:55 2005CHROMAT_FILE: MSMg01no269_h07.g1 PHD_FILE: MSMg01no269_h07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACCAAGGAAGAAGTGAAACAGCTTAGCCAAGTTTTAAAATCTTCAAAAGG
CTTCTACCCTGACCTTTAGTGGAAGTACCTACAGATTCTCAGTCCCAAGG
GTGTGCCTGCATCCTGCATTTCATACTCATAAAAGGACTTTTCTCTGGAA
AGATGGCTTTACATCACCTGTCATATCCAAGAAGAATCGCCAGCTATTCC
GTTCAATGTTCCTAATTGTTGTCAGAAAATGACCTAAAACTCTGACACAG
AATTTTTCAAAGTCAGGCTTCCACAAGGCACGTACATTTATCAACGTTTA
CGCCACATGTTTCTTTTCTCGCCCACCCGCCGAAGGTCTGTTTTTATTTA
ATTCTCAAGATTTTGTTGTTAATGGGAAAACTGTCTCATAAATTAAGGAA
GTGCTCAATTACAGTCCTGACAGAGATTGATTCCCATTTCGCTGCTGGTC
AGTACCAGCAAGTGAAGGCCAAGGAAACCACAACTCCTGCTAATGCTGGC
ACCACTTCAAAGGTGACCATGAACAAGTGGTCATTACCAATTAGGATAGT
GCTTGGCCACAAGCCTGGGAACTGTTTGTATTTGATAGCGACCATCTGTG
TGAGAATTCCTTCATTGTGTGGTTATGGATGCTCATGGTATAGAATACAT
CTTCAAATGATTTGCATATTCATTTTGTTAAAAAAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCAGCTGAGGAATACGAATGGCTGAGAAGCA
CCTGAAAAAATGTTCAGCCCCCATGATCATCAGGGAAATGCAAATCAAAA
CAACCCTGAGATTTCACCTCACACCAGTCAGAATGGCTAAGATCAAAAAT
TCAGGTGACAGCAGATGCTGGCAAGGATGTGGAAAAAGAGGAACATTCCT
CCATTGCTGGTGGGATTGCAAGCGGTATAACCACTCCTGAAATCAGTTTG
GTGGTTCATCAGAAAATTGTTTCTGGGAGTTCATTCTATAAAAAATATAA
ATCAGATCTTGTTTAATACANGNCCCAAANCCCTTCAGATTCCTTGANTT
TAATTAAAGTTTANNAGCAGTGAATGTATTGATGAAAATTGGGTGAGGGC
TGACACTGGGAGAGGATAATGGATAAGGGATGTGAAGGAGTTGCCAGGAT
TAGCTGAAATAGTCTATGCCTTGCTTAATGTCGTTGGTATTTTTGATATA
CTTATTTGCAAACACATTTTAAAATTATATACTTTGAGAATACACAGTTG
TGACTTAAGCAGTTGACATGGAGAAAAAAATATAACTTTGCCCTCTCATC
TTGAAACAGGATATTAAGAGAACATAAGAAAACCGAACGTAGGATAAGAC
CAAATTTGTGTTCCTAATTCAAATGAATGTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no269_h07.b1 MSMg01no269_h07.b1 CHROMAT_FILE:
MSMg01no269_h07.b1 PHD_FILE: MSMg01no269_h07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:55 2005
         (319 letters)



>mm_chr3_4582698_4583416
          Length = 719

 Score =  596 bits (308), Expect = e-175
 Identities = 314/316 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaccaaggaagaagtgaaacagcttagccaagttttaaaatcttcaaaaggctt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 ggaattcaccaaggaagaagtgaaacagcttagccaagttttaaaatcttcaaaaggctt 460

                                                                       
Query: 64  ctaccctgacctttagtggaagtacctacagattctcagtcccaagggtgtgcctgcatc 123
           ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 459 ctaccctgaccttcagtggaagtacctacagattctcagtcccaagggtatgcctgcatc 400

                                                                       
Query: 124 ctgcatttcatactcataaaaggacttttctctggaaagatggctttacatcacctgtca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ctgcatttcatactcataaaaggacttttctctggaaagatggctttacatcacctgtca 340

                                                                       
Query: 184 tatccaagaagaatcgccagctattccgttcaatgttcctaattgttgtcagaaaatgac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tatccaagaagaatcgccagctattccgttcaatgttcctaattgttgtcagaaaatgac 280

                                                                       
Query: 244 ctaaaactctgacacagaatttttcaaagtcaggcttccacaaggcacgtacatttatca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 ctaaaactctgacacagaatttttcaaagtcaggcttccacaaggcacgtacatttatca 220

                           
Query: 304 acgtttacgccacatg 319
           ||||||||||||||||
Sbjct: 219 acgtttacgccacatg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)