BAC Information

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BAC

Clone NameMSMg01-270C10
Chromosome3 (Build37)
Map Location 118,779,929 - 118,851,750
singlet/doubletdoublet
Overlap geneDpyd
Upstream genenone
Downstream geneLOC100043275, LOC100043278, Ptbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-270C10.T7 (MSMg01no270_c10.b1)MSMg01-270C10.TJ (MSMg01no270_c10.g1)
ACCAG410069AG410070
length732743
length of high quality
(start - end)
578 (42 - 619)671 (73 - 743)
definitionCHROMAT_FILE: MSMg01no270_c10.b1 PHD_FILE: MSMg01no270_c10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:44 2005CHROMAT_FILE: MSMg01no270_c10.g1 PHD_FILE: MSMg01no270_c10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,779,929 - 118,780,530)(118,851,088 - 118,851,750)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAAATGTGATGCTACCAGTCTTAGCTCAGCTTCCAGGCTACCCTGGGTAC
ATCAGAGCTGTCCACAAATTTATCTCTCATTGCCAGCATCCTCACCTTGA
TGCTGAATCATAGGAACTCACAGAAGTTAAAACAGACCTTAGCTGCTATT
AAGTAATATAAGACATGTTGGTTGAATCTCTAAGCTTTGGCTTTGTGAGA
GATTAAAATGTTGGTGGTTCATGTCATTCAGTAAGAGAAAAATCTTAAGA
ACAATCTATCAAAGCCTTTAAAGTAGTCATTATACAAGCATTAAAGGGTT
ACAATAGAGGCTTTTGCAAATTCCTTGTCTTTTTGTAATCAGACTGCCTT
TGGGTAAGAATAGCATCTCTCTGATTTGGAGGCATGGCCCTGAGCATGGT
GAACAGCTAGAAAAAAAAAAGCCCAGGGGAGTGGGGAATGCAGTGAACTC
AGACTGTTCCTTTATCTGAATAAATTCATGAGATCAGCCAGGCCTACATG
GGCCCAAGTGAAGATCAAGTTCAAAACTAGAAAAGCTCAGAGGGTTCAGT
GGGTCCACTTCCTTTAATATCTGTCTGGNAGTCTTTGTGTTCTAATCTTT
GGAGGACTCAATTCTAAGGTGTTCTTNCATAGCATAGGGATGTCTGAGAA
GAGGAGAATCAACTGGAACTGTTAATTAGAAT
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTGTGCAGTATTAGCCAAGAAGCTCTAA
TGAAGGCATTGATAGCCATGGAGAGTGGGAAACCAACAAGGGCAAGGACA
ACAGTATGCTATAACCTCTCGGAGGATTAGAGATGGGGAAACAAATTCAT
TGACAGGGAGCCAAACTCTACCTCATCACAGATGCAAGAACAGAATTCTG
TTTCCCACCTCCGTAGTCTTGCACACGTCATTGTCTTCTATTTTCAGGGA
ACACTTGGTTGATGGATAAGTTATATCAGTTCATATATTAGATGTCATTT
ACCCAGATGTAAAAGCTGATTTTCATGTGGATAACTTCAGCCAAAGGGTA
TGAGGTCTGGACAGACAGATGAGTAGTAGGCAAAGGAGACAGTTGGGGGT
GGTCTGCATATTTTACTCATTTTCTTCCCTGTTTGCATATGGACGTGGAT
GCTCTGAAGTAACAATGGGAAATACTGGACAAGGTACCCGAGAAGAGGCC
AGCATGAAAAGAACCAAAGCTTTGGGCCTTGATAGTTTGAGGGAAAACAG
ATGAAACATCACATTCTGGCCAGTTCCATCCTATACATAAAGGGCTGACA
AGAACAACCCTTCAGGCTCCCTTGGCTCCATACACCCAAGCTTCACCACA
GCACAGAACATCACAGCTGAAGGGGAAAACTATCAATTTACAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no270_c10.b1 MSMg01no270_c10.b1 CHROMAT_FILE:
MSMg01no270_c10.b1 PHD_FILE: MSMg01no270_c10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:44 2005
         (578 letters)



>mm_chr3_118779748_118780730
          Length = 983

 Score = 1040 bits (538), Expect = 0.0
 Identities = 573/602 (95%), Gaps = 28/602 (4%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaatgtgatgctaccagtcttagctcagcttccaggctaccctgggtacatcag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 gaattcaaatgtgatgctaccagtcttagctcagcttccaggctaccctgggtacatcag 241

                                                                       
Query: 65  agctgtccacaaatttatctctcattgccagcatcctcaccttgatgctgaatcatagga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 agctgtccacaaatttatctctcattgccagcatcctcaccttgatgctgaatcatagga 301

                                                                       
Query: 125 actcacagaagttaaaacagaccttagctgctattaagtaatataagacatgttggttga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 actcacagaagttaaaacagaccttagctgctattaagtaatataagacatgttggttga 361

                                                                       
Query: 185 atctctaagctttggctttgtgagagattaaaatgttggtggttcatgtcattcagtaag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 atctctaagctttggctttgtgagagattaaaatgttggtggttcatgtcattcagtaag 421

                                                                       
Query: 245 agaaaaatcttaagaacaatctatcaaagcctttaaagtagtcattatacaagcattaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 agaaaaatcttaagaacaatctatcaaagcctttaaagtagtcattatacaagcattaaa 481

                                                                       
Query: 305 g-----------------------ggttacaatagaggcttttgcaaattccttgtcttt 341
           |                       ||||||||||||||||||||||||||||||||||||
Sbjct: 482 gtagtcattatacaagcattaaagggttacaatagaggcttttgcaaattccttgtcttt 541

                                                                       
Query: 342 ttgtaatcagactgcctttgggtaagaatagcatctctctgatttggaggcatggccctg 401
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 542 ttgtaatcagactgcctttgggtaagaatagcatctctctgatttggaggcatggccttg 601

                                                                       
Query: 402 agcatggtgaacagctagaaaaaaaaaa-----gcccaggggagtggggaatgcagtgaa 456
           ||||||||||||||||||||||||||||     |||||||||||||||||||||||||||
Sbjct: 602 agcatggtgaacagctagaaaaaaaaaaaaaaagcccaggggagtggggaatgcagtgaa 661

                                                                       
Query: 457 ctcagactgttcctttatctgaataaattcatgagatcagccaggcctacatgggcccaa 516
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 ctcagactgttcctttatctgaataaattcatgagatcagccaggcctacatgggcccaa 721

                                                                       
Query: 517 gtgaagatcaagttcaaaactagaaaagctcagagggttcagtgggtccacttcctttaa 576
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 gtgaagatcaagttcaaaactagaaaagctcagagggttcagtgggtccacttcctttaa 781

             
Query: 577 ta 578
           ||
Sbjct: 782 ta 783


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 983
Length adjustment: 10
Effective length of query: 568
Effective length of database: 973
Effective search space:   552664
Effective search space used:   552664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no270_c10.g1 MSMg01no270_c10.g1 CHROMAT_FILE:
MSMg01no270_c10.g1 PHD_FILE: MSMg01no270_c10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:45 2005
         (671 letters)



>mm_chr3_118850884_118851951
          Length = 1068

 Score = 1137 bits (588), Expect = 0.0
 Identities = 646/666 (96%), Gaps = 3/666 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gcagtattagccaagaagctctaatgaaggcattgatagccatggagagtgggaaaccaa 64
           |||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||
Sbjct: 867 gcagtattagccaagaagctctaatgaaggcattaaaagcaatggagagtgggaaaccaa 808

                                                                       
Query: 65  caagggcaaggacaacagtatgctataacctctcggaggattagagatggggaaacaaat 124
           ||||||||||||| || |||||||||||||||||||||  |||||||||||||||||| |
Sbjct: 807 caagggcaaggaccaccgtatgctataacctctcggag--ttagagatggggaaacaagt 750

                                                                       
Query: 125 tcattgacagggagccaaactctacctcatcacagatgcaagaacagaattctgtttccc 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 749 tcattgacagggagccaaactctacctcatcacagatgcaagaacagaattctggttccc 690

                                                                       
Query: 185 acctccgtagtcttgcacacgtcattgtcttctattttcagggaacacttggttgatgga 244
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 689 acctccgtagtcctgcacacgtcattgtcttctattttcagggaacacttggttgattga 630

                                                                       
Query: 245 taagttatatcagttcatatattagatgtcatttacccagatgtaaaagctgattttcat 304
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 taagtt-tatcagttcatatattagatgtcatttacccagatgtaaaagctgattttcat 571

                                                                       
Query: 305 gtggataacttcagccaaagggtatgaggtctggacagacagatgagtagtaggcaaagg 364
           ||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||
Sbjct: 570 gtggataacttcagccaaagggtctgagttctggacagacagaagagtagtaggcaaagg 511

                                                                       
Query: 365 agacagttgggggtggtctgcatattttactcattttcttccctgtttgcatatggacgt 424
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 agacagtttggggtggtctgcatattttactcattttcttccctgtttgcatatggacgt 451

                                                                       
Query: 425 ggatgctctgaagtaacaatgggaaatactggacaaggtacccgagaagaggccagcatg 484
           |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 450 ggatgctctgaagtaacaatggaaaatactggacaaggtacctgagaagaggccagcatg 391

                                                                       
Query: 485 aaaagaaccaaagctttgggccttgatagtttgagggaaaacagatgaaacatcacattc 544
           ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 aagggaaccaaagctttgggccttgatagtttgagggaaaacagatgaaacatcacattc 331

                                                                       
Query: 545 tggccagttccatcctatacataaagggctgacaagaacaacccttcaggctcccttggc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tggccagttccatcctatacataaagggctgacaagaacaacccttcaggctcccttggc 271

                                                                       
Query: 605 tccatacacccaagcttcaccacagcacagaacatcacagctgaaggggaaaactatcaa 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tccatacacccaagcttcaccacagcacagaacatcacagctgaaggggaaaactatcaa 211

                 
Query: 665 tttaca 670
           ||||||
Sbjct: 210 tttaca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1068
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1058
Effective search space:   699338
Effective search space used:   699338
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)