Query= MSMg01no270_c10.b1 MSMg01no270_c10.b1 CHROMAT_FILE:
MSMg01no270_c10.b1 PHD_FILE: MSMg01no270_c10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:44 2005
(578 letters)
>mm_chr3_118779748_118780730
Length = 983
Score = 1040 bits (538), Expect = 0.0
Identities = 573/602 (95%), Gaps = 28/602 (4%)
Strand = Plus / Plus
Query: 5 gaattcaaatgtgatgctaccagtcttagctcagcttccaggctaccctgggtacatcag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 gaattcaaatgtgatgctaccagtcttagctcagcttccaggctaccctgggtacatcag 241
Query: 65 agctgtccacaaatttatctctcattgccagcatcctcaccttgatgctgaatcatagga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 agctgtccacaaatttatctctcattgccagcatcctcaccttgatgctgaatcatagga 301
Query: 125 actcacagaagttaaaacagaccttagctgctattaagtaatataagacatgttggttga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 actcacagaagttaaaacagaccttagctgctattaagtaatataagacatgttggttga 361
Query: 185 atctctaagctttggctttgtgagagattaaaatgttggtggttcatgtcattcagtaag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 atctctaagctttggctttgtgagagattaaaatgttggtggttcatgtcattcagtaag 421
Query: 245 agaaaaatcttaagaacaatctatcaaagcctttaaagtagtcattatacaagcattaaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 agaaaaatcttaagaacaatctatcaaagcctttaaagtagtcattatacaagcattaaa 481
Query: 305 g-----------------------ggttacaatagaggcttttgcaaattccttgtcttt 341
| ||||||||||||||||||||||||||||||||||||
Sbjct: 482 gtagtcattatacaagcattaaagggttacaatagaggcttttgcaaattccttgtcttt 541
Query: 342 ttgtaatcagactgcctttgggtaagaatagcatctctctgatttggaggcatggccctg 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 542 ttgtaatcagactgcctttgggtaagaatagcatctctctgatttggaggcatggccttg 601
Query: 402 agcatggtgaacagctagaaaaaaaaaa-----gcccaggggagtggggaatgcagtgaa 456
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 602 agcatggtgaacagctagaaaaaaaaaaaaaaagcccaggggagtggggaatgcagtgaa 661
Query: 457 ctcagactgttcctttatctgaataaattcatgagatcagccaggcctacatgggcccaa 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 ctcagactgttcctttatctgaataaattcatgagatcagccaggcctacatgggcccaa 721
Query: 517 gtgaagatcaagttcaaaactagaaaagctcagagggttcagtgggtccacttcctttaa 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 gtgaagatcaagttcaaaactagaaaagctcagagggttcagtgggtccacttcctttaa 781
Query: 577 ta 578
||
Sbjct: 782 ta 783
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 983
Length adjustment: 10
Effective length of query: 568
Effective length of database: 973
Effective search space: 552664
Effective search space used: 552664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no270_c10.g1 MSMg01no270_c10.g1 CHROMAT_FILE:
MSMg01no270_c10.g1 PHD_FILE: MSMg01no270_c10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:45 2005
(671 letters)
>mm_chr3_118850884_118851951
Length = 1068
Score = 1137 bits (588), Expect = 0.0
Identities = 646/666 (96%), Gaps = 3/666 (0%)
Strand = Plus / Minus
Query: 5 gcagtattagccaagaagctctaatgaaggcattgatagccatggagagtgggaaaccaa 64
|||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||
Sbjct: 867 gcagtattagccaagaagctctaatgaaggcattaaaagcaatggagagtgggaaaccaa 808
Query: 65 caagggcaaggacaacagtatgctataacctctcggaggattagagatggggaaacaaat 124
||||||||||||| || ||||||||||||||||||||| |||||||||||||||||| |
Sbjct: 807 caagggcaaggaccaccgtatgctataacctctcggag--ttagagatggggaaacaagt 750
Query: 125 tcattgacagggagccaaactctacctcatcacagatgcaagaacagaattctgtttccc 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 749 tcattgacagggagccaaactctacctcatcacagatgcaagaacagaattctggttccc 690
Query: 185 acctccgtagtcttgcacacgtcattgtcttctattttcagggaacacttggttgatgga 244
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 689 acctccgtagtcctgcacacgtcattgtcttctattttcagggaacacttggttgattga 630
Query: 245 taagttatatcagttcatatattagatgtcatttacccagatgtaaaagctgattttcat 304
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 taagtt-tatcagttcatatattagatgtcatttacccagatgtaaaagctgattttcat 571
Query: 305 gtggataacttcagccaaagggtatgaggtctggacagacagatgagtagtaggcaaagg 364
||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||
Sbjct: 570 gtggataacttcagccaaagggtctgagttctggacagacagaagagtagtaggcaaagg 511
Query: 365 agacagttgggggtggtctgcatattttactcattttcttccctgtttgcatatggacgt 424
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 agacagtttggggtggtctgcatattttactcattttcttccctgtttgcatatggacgt 451
Query: 425 ggatgctctgaagtaacaatgggaaatactggacaaggtacccgagaagaggccagcatg 484
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 450 ggatgctctgaagtaacaatggaaaatactggacaaggtacctgagaagaggccagcatg 391
Query: 485 aaaagaaccaaagctttgggccttgatagtttgagggaaaacagatgaaacatcacattc 544
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 aagggaaccaaagctttgggccttgatagtttgagggaaaacagatgaaacatcacattc 331
Query: 545 tggccagttccatcctatacataaagggctgacaagaacaacccttcaggctcccttggc 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tggccagttccatcctatacataaagggctgacaagaacaacccttcaggctcccttggc 271
Query: 605 tccatacacccaagcttcaccacagcacagaacatcacagctgaaggggaaaactatcaa 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tccatacacccaagcttcaccacagcacagaacatcacagctgaaggggaaaactatcaa 211
Query: 665 tttaca 670
||||||
Sbjct: 210 tttaca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1068
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1058
Effective search space: 699338
Effective search space used: 699338
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|