Query= MSMg01no270_f08.b1 MSMg01no270_f08.b1 CHROMAT_FILE:
MSMg01no270_f08.b1 PHD_FILE: MSMg01no270_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:57 2005
(318 letters)
>mm_chr3_30329683_30330402
Length = 720
Score = 551 bits (285), Expect = e-161
Identities = 307/315 (97%), Gaps = 2/315 (0%)
Strand = Plus / Minus
Query: 5 gaattctaagacataggctttccatcctgtgacactggataaaaccaggccatttgaagc 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gaattctaagacacaggctttccatcctgtgacactggataaaaccaggccatttgaagc 460
Query: 65 aacaggagaaatggaagtgtaagcttctgtagacttagatggtaagagtcccactgtatc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 aacaggagaaatggaagtgtaagcttctgtagacttagatggtaagagtcccactgtatc 400
Query: 125 atgac--agagagagacaagtgtgcttgcatagttatctggtgaaggttgtgcctaaact 182
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 atgacagagagagagacaagtgtgcttgcatagttatctggtgaaggttgtgcctaaact 340
Query: 183 gggcatcagaggattcggtgaacaatggagcaggggcaatgggcacccagtggggagaag 242
|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 339 gggcatcagaggattcagtgagcaatggagcaggggcaatgggcacccagtggggagagg 280
Query: 243 aagcattcgagaagagaggaggagcacaaaggacaagaagagtgggaagagatagaggcc 302
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 aagcattcaagaagagagaaggagcacaaaggacaagaagagtgggaagagatagaggcc 220
Query: 303 ttctgaggaagtgca 317
|||||||||||||||
Sbjct: 219 ttctgaggaagtgca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 720
Length adjustment: 9
Effective length of query: 309
Effective length of database: 711
Effective search space: 219699
Effective search space used: 219699
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no270_f08.g1 MSMg01no270_f08.g1 CHROMAT_FILE:
MSMg01no270_f08.g1 PHD_FILE: MSMg01no270_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:57 2005
(632 letters)
>mm_chr3_30180574_30181605
Length = 1032
Score = 1191 bits (616), Expect = 0.0
Identities = 628/632 (99%)
Strand = Plus / Plus
Query: 1 tgagaaccaaagtaatcaagggccatctctaggttggaaagggtgccaccatctcttgta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgagaaccaaagtaatcaagggccatctctaggttggaaagggtgccaccatctcttgta 260
Query: 61 cagctcagcgttctaagataacggcacagctgtgctgtggagaattcgaaatggcagtta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagctcagcgttctaagataacggcacagctgtgctgtggagaattcgaaatggcagtta 320
Query: 121 attatgaaagaaaaaagtaaactttgaacaagctgagaaagtcatgagtttaaagcagta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attatgaaagaaaaaagtaaactttgaacaagctgagaaagtcatgagtttaaagcagta 380
Query: 181 agaagcagaaggtgagccggcgctgcactatctccatccatagaactagctaaaagtaat 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaagcagaaggtgagcgggcgctgcactatctccatccatagaactagctaaaagtaat 440
Query: 241 ttgtttttcaataaatcctcatttccaatattctgggtgcctctggtataaaatgttata 300
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 441 ttgtttttcaataaatcctcatttccaatattctgggtgcctctggcagaaaatgttata 500
Query: 301 tagctgtaaaatgtgaaacttcattggagccattttaagacttttgcctgtcctagccac 360
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagctgtaaaatgtgaaccttcattggagccattttaagacttttgcctgtcctagccac 560
Query: 361 ttaatttggaagctataccctgtgttatatcaaaaattaaaatgttcatatatcctatat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttaatttggaagctataccctgtgttatatcaaaaattaaaatgttcatatatcctatat 620
Query: 421 ttaatataattcaaacacaaccctggatgaattgaattgcagttgactggctgatagagc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttaatataattcaaacacaaccctggatgaattgaattgcagttgactggctgatagagc 680
Query: 481 accgaattgataaatactattttcatttatatttcaaaggcagtaatttttttttcaagt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 accgaattgataaatactattttcatttatatttcaaaggcagtaatttttttttcaagt 740
Query: 541 atcacataaatatttacgataggcctcagataaagcaggagctcttgggcgcaacctata 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atcacataaatatttacgataggcctcagataaagcaggagctcttgggcgcaacctata 800
Query: 601 atgggaacagataaaagcaatcttgtctgcct 632
||||||||||||||||||||||||||||||||
Sbjct: 801 atgggaacagataaaagcaatcttgtctgcct 832
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space: 635684
Effective search space used: 635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
