BAC Information

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BAC

Clone NameMSMg01-270G07
Chromosome3 (Build37)
Map Location 14,360,447 - 14,361,050
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039823, LOC100039861, 0710005M24Rik, LOC100041679, LOC100041667, LOC100039882
Downstream geneEG622229, LOC668062, Slc7a12, LOC668068, Lrrcc1, E2f5, 1810022K09Rik, LOC100039929, Car13, EG545507, Car1, LOC100041785, Car3, Car2, EG634323, LOC100039985, LOC751864
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-270G07.T7 (MSMg01no270_g07.b1)MSMg01-270G07.TJ (MSMg01no270_g07.g1)
ACCAG410242AG410243
length736737
length of high quality
(start - end)
323 (39 - 361)604 (125 - 728)
definitionCHROMAT_FILE: MSMg01no270_g07.b1 PHD_FILE: MSMg01no270_g07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:02 2005CHROMAT_FILE: MSMg01no270_g07.g1 PHD_FILE: MSMg01no270_g07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
AACTGAGGAATACCGAATGGCTTAGAAGCACCTGAAAAAATGTTAAACAT
CCTTAATCATCAGGGAAATGGAAATCAAAACAACCTAGAGATTCCACCTC
ACACCAGTCAGAATGGCTAAGATCCAAAATTCAGGTGACAGCATATGCTT
GCGAGGATATGGAGAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAAG
CTTGTACAACCACTCTGGAAATCAGTCTGGTGGTTCTTCAGAAAATTGGA
CATAGTACTACTGGAGCATCCCACAATACCTCTCCTGGGCATATATCCAG
AAGATGTTCCTATTGGTAATAACGACACATGCTCCACTATGTTCTTAGCA
GCCTTATTTATAATAGTCAGAAGCTGGAAAGAACCCAGATGTTGCTCAAC
AGAGAAATTGATACAGAAAATGTAGTACATTTAAACAATGGATCACTACT
CAGCTATTAAAAACAATGAATTTATGAAATTCCTAGGCAAATGGATGGAC
CTGGAGGGTATCATCCTGAGTGCGGTAACCCAAACACCAAAGAACTCACG
TGATATGTACTCACTGATAAGTGGATAATAGCCCAGAAACTTAGAATACC
CAAAATACAAGATACAATTTACAAAACACATGAAATTCAAGAAGAACGAA
GACCAAAGTGTGGACACTTTACATTCATAGAATTGG
CAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAAGCATAATGAATGGAGATAAAGG
GAAATAAAACAAAACATATTACACAAACAAAGCCCTGTTACCATTAGCTT
TGTCTCCCTCTCTCTGCTTCTCTCCCCTCTTCTTGCCCCCTCTCTCCTAT
TAGTCTAACTATAATTTTTTCTGTTGTTATGTCTCCTTCGTTCTTCCTTT
CCTCCTGGAATAAGAAAGTATATGACTTGTTCTTTATTTTATTACAATCT
ATAGTTGAGAGACTTTAAATAGACATGGGATGTTTTAGAGTCTGAACTTT
TGAAATCTTGATATATTTAAAGACAGTGAGGCAATTTAAAGTTTAAATAT
TTTAATGCTATAATAATAATATTAACTATTTATTTAATATATATGAGTAC
CCTGTAACTGTCTTCAGACACACCAGAAGAAGGCATCAGATCCCATTACA
AAGGGTTGTGAGCCACCATGTGATGCTGAGAATTAAACTCAGGACCTCAG
GAAGAGTAGTCAGTGCTCTTAACCACTGAGCCATTTCTCCTGCCCAATAT
TAATATTAAATGAGTTTTGTGGATACAAGATGATACAGCTTTATTTTAAT
ATTGATATGTTTGTATCAAGATGACAAGGGGTCAATTGTGCTAGAAAGGT
TTTCTTTTGGTTTGGCTTGGTTTTTGGTTTGGCTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no270_g07.g1 MSMg01no270_g07.g1 CHROMAT_FILE:
MSMg01no270_g07.g1 PHD_FILE: MSMg01no270_g07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:02 2005
         (604 letters)



>mm_chr3_14360247_14361250
          Length = 1004

 Score = 1129 bits (584), Expect = 0.0
 Identities = 599/604 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaacaaagccctgttaccattagctttgtctccctctctctgcttctctcccctcttctt 60
           ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaacaaaaccctgttagcattagctttgtctccctctctctgcttctctcccctcttctt 260

                                                                       
Query: 61  gccccctctctcctattagtctaactataattttttctgttgttatgtctccttcgttct 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 261 gccccctctctcctattagtctaactatatttttttctgttgttatgtctccttcattct 320

                                                                       
Query: 121 tcctttcctcctggaataagaaagtatatgacttgttctttattttattacaatctatag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcctttcctcctggaataagaaagtatatgacttgttctttattttattacaatctatag 380

                                                                       
Query: 181 ttgagagactttaaatagacatgggatgttttagagtctgaacttttgaaatcttgatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgagagactttaaatagacatgggatgttttagagtctgaacttttgaaatcttgatat 440

                                                                       
Query: 241 atttaaagacagtgaggcaatttaaagtttaaatattttaatgctataataataatatta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttaaagacagtgaggcaatttaaagtttaaatattttaatgctataataataatatta 500

                                                                       
Query: 301 actatttatttaatatatatgagtaccctgtaactgtcttcagacacaccagaagaaggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actatttatttaatatatatgagtaccctgtaactgtcttcagacacaccagaagaaggc 560

                                                                       
Query: 361 atcagatcccattacaaagggttgtgagccaccatgtgatgctgagaattaaactcagga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atcagatcccattacaaagggttgtgagccaccatgtgatgctgagaattaaactcagga 620

                                                                       
Query: 421 cctcaggaagagtagtcagtgctcttaaccactgagccatttctcctgcccaatattaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cctcaggaagagtagtcagtgctcttaaccactgagccatttctcctgcccaatattaat 680

                                                                       
Query: 481 attaaatgagttttgtggatacaagatgatacagctttattttaatattgatatgtttgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 attaaatgagttttgtggatacaagatgatacagctttattttaatattgatatgtttgt 740

                                                                       
Query: 541 atcaagatgacaaggggtcaattgtgctagaaaggttttcttttggtttggcttggtttt 600
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtcaagatgacaaggggtcaattgtgctagaaaggttttcttttggtttggcttggtttt 800

               
Query: 601 tggt 604
           ||||
Sbjct: 801 tggt 804


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space:   590436
Effective search space used:   590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)