BAC Information

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BAC

Clone NameMSMg01-270J12
Chromosome3 (Build37)
Map Location 37,105,690 - 37,209,961
singlet/doubletdoublet
Overlap geneIl21, Cetn4
Upstream geneGpr103, Anxa5, 1810062G17Rik, LOC665709, Exosc9, Ccna2, Bbs7, Trpc3, 4932438A13Rik, Tenr, LOC652987, Il2
Downstream geneBbs12, LOC100041328, Fgf2, LOC100040649, Nudt6, Spata5, LOC665778, Spry1, EG381438, LOC100038875, LOC100041338, EG626367, 4930556A17Rik, LOC665811, EG665821, LOC100041366, LOC100040785
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-270J12.T7 (MSMg01no270_j12.b1)MSMg01-270J12.TJ (MSMg01no270_j12.g1)
ACCAG410384AG410385
length733740
length of high quality
(start - end)		318 (41 - 358)667 (74 - 740)
definitionCHROMAT_FILE: MSMg01no270_j12.b1 PHD_FILE: MSMg01no270_j12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:17 2005CHROMAT_FILE: MSMg01no270_j12.g1 PHD_FILE: MSMg01no270_j12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,209,648 - 37,209,961)(37,105,690 - 37,106,356)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAAAAGTCACACATTCGAAGAAACTATCTGCAGCTGACAAAATCACACCC
CTGCTAGAGCACGAGGCAAATCATAGTCAGCTGCTGTGGACAGTCTGAAG
CAGCCCCATATCCCACACCTGGGATTAGAATGAAAACGTATTCCCACAAC
ATTTCTGTGTTTTTCAAAGAAAATAAAATTCTCACTACATCAAGCAAGTA
CTGTGATACATGTATGAGAAGTGCACATTTCTTAAAATAATACTGTTCTC
ATAAGCTAACTGCACTCTGATATACCACACAGTTTTATGCTAGTTTACTT
AGCTGCTTCTCTCTTCAAAAGCTCTAGCTTTAAGAGGGGGAAAATCTAAG
AGAAAAAAAATGCCCACATTTTCTATCAAATTAATAATTGTGGTTAGGAA
TCTCGGGCAGGACTGAGAGTTCCAGGGCAGTCTGGGTGCCCTAGGGAGGC
CCTGTTTCAAAAGATGGGGGAAAAGATGTTAATAACCTAAAGTATTAACA
AGGGGGAAAACAAGCTCATTCTATAAAAGAAAATGGGATAACTGAATTGT
CATTCTAGCTACACAGTTTTCACCCATGTGTATGCTTATTGCAGGCATCC
AGCCAGCGCATAACTTTAGACCAATGGAAGAAAAAAGCAGCAAAAGTTGA
ACTGAATGACACCCAGAAAGCAGAAATTAAAGN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATATGAGACATGAAGTGGGGTACAGAA
CAGATGACAAGTAGAGATTATCACAAAGAGACAAGGGACAAGAGTGGCCA
GTGGCCAGAGAGACCACTGTGAAGGAAAAAATGCATAATGTGGTAGTCGA
CAGTGAACAGGTGTGCGTATGAAGGCTTTATACTACTCTCAAGCATTTAT
GAAACATATTTCACTGTCCGGGTGATTGACAGGCCCATTTGGGTTCACTC
TTCAGGGGGAGGGACAATGGTTTGTCTCTATTCTTTACTAGAAAGCCCCA
ATTCCTCCCAAGCCAGAGATAAGACTGAGATCCCATTCTGTTGGCCAAAA
ATCATGTAGTGGGGTAGACCCATAAGAATGAAAGAAAAGCATCTATAAAA
ATAGCCATATTTACCCAGAGGAAATGAGCTGCTCAGAACGGGACTCACTG
ATGCACAGCCACCTGGACCTTCCGACCTTCCGTACAGCTTTAAATCTTGA
GGGGCAATTGGGAATCTTTCCTCCTTCTTAAAATTAGTATTACCAGAGAC
ACAGGGCCCATAAGTGATTGTAAAGGACAGGCCTCATCCTCAATGACTTT
CAAGCCCCAGAGTCTCTATCACCATACCTAAAACTCTGTTACATTAAGGA
GGCTTTTCAAATGTTTTCTTTAAGGCTTTTTGTTTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no270_j12.b1 MSMg01no270_j12.b1 CHROMAT_FILE:
MSMg01no270_j12.b1 PHD_FILE: MSMg01no270_j12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:17 2005
         (318 letters)



>mm_chr3_37209249_37209966
          Length = 718

 Score =  607 bits (314), Expect = e-178
 Identities = 314/314 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaaaagtcacacattcgaagaaactatctgcagctgacaaaatcacacccctgc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 gaattccaaaagtcacacattcgaagaaactatctgcagctgacaaaatcacacccctgc 654

                                                                       
Query: 65  tagagcacgaggcaaatcatagtcagctgctgtggacagtctgaagcagccccatatccc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 tagagcacgaggcaaatcatagtcagctgctgtggacagtctgaagcagccccatatccc 594

                                                                       
Query: 125 acacctgggattagaatgaaaacgtattcccacaacatttctgtgtttttcaaagaaaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 acacctgggattagaatgaaaacgtattcccacaacatttctgtgtttttcaaagaaaat 534

                                                                       
Query: 185 aaaattctcactacatcaagcaagtactgtgatacatgtatgagaagtgcacatttctta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 aaaattctcactacatcaagcaagtactgtgatacatgtatgagaagtgcacatttctta 474

                                                                       
Query: 245 aaataatactgttctcataagctaactgcactctgatataccacacagttttatgctagt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 aaataatactgttctcataagctaactgcactctgatataccacacagttttatgctagt 414

                         
Query: 305 ttacttagctgctt 318
           ||||||||||||||
Sbjct: 413 ttacttagctgctt 400


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no270_j12.g1 MSMg01no270_j12.g1 CHROMAT_FILE:
MSMg01no270_j12.g1 PHD_FILE: MSMg01no270_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:17 2005
         (667 letters)



>mm_chr3_37105490_37106556
          Length = 1067

 Score = 1290 bits (667), Expect = 0.0
 Identities = 667/667 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatgagacatgaagtggggtacagaacagatgacaagtagagattatcacaaagagaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atatgagacatgaagtggggtacagaacagatgacaagtagagattatcacaaagagaca 260

                                                                       
Query: 61  agggacaagagtggccagtggccagagagaccactgtgaaggaaaaaatgcataatgtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agggacaagagtggccagtggccagagagaccactgtgaaggaaaaaatgcataatgtgg 320

                                                                       
Query: 121 tagtcgacagtgaacaggtgtgcgtatgaaggctttatactactctcaagcatttatgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagtcgacagtgaacaggtgtgcgtatgaaggctttatactactctcaagcatttatgaa 380

                                                                       
Query: 181 acatatttcactgtccgggtgattgacaggcccatttgggttcactcttcagggggaggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acatatttcactgtccgggtgattgacaggcccatttgggttcactcttcagggggaggg 440

                                                                       
Query: 241 acaatggtttgtctctattctttactagaaagccccaattcctcccaagccagagataag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaatggtttgtctctattctttactagaaagccccaattcctcccaagccagagataag 500

                                                                       
Query: 301 actgagatcccattctgttggccaaaaatcatgtagtggggtagacccataagaatgaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actgagatcccattctgttggccaaaaatcatgtagtggggtagacccataagaatgaaa 560

                                                                       
Query: 361 gaaaagcatctataaaaatagccatatttacccagaggaaatgagctgctcagaacggga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaaaagcatctataaaaatagccatatttacccagaggaaatgagctgctcagaacggga 620

                                                                       
Query: 421 ctcactgatgcacagccacctggaccttccgaccttccgtacagctttaaatcttgaggg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctcactgatgcacagccacctggaccttccgaccttccgtacagctttaaatcttgaggg 680

                                                                       
Query: 481 gcaattgggaatctttcctccttcttaaaattagtattaccagagacacagggcccataa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gcaattgggaatctttcctccttcttaaaattagtattaccagagacacagggcccataa 740

                                                                       
Query: 541 gtgattgtaaaggacaggcctcatcctcaatgactttcaagccccagagtctctatcacc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtgattgtaaaggacaggcctcatcctcaatgactttcaagccccagagtctctatcacc 800

                                                                       
Query: 601 atacctaaaactctgttacattaaggaggcttttcaaatgttttctttaaggctttttgt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 atacctaaaactctgttacattaaggaggcttttcaaatgttttctttaaggctttttgt 860

                  
Query: 661 ttttttc 667
           |||||||
Sbjct: 861 ttttttc 867


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space:   694449
Effective search space used:   694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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