BAC Information

Click to search

BAC

Clone NameMSMg01-271C10
Chromosome3 (Build37)
Map Location 136,363,593 - 136,363,831
singlet/doubletsinglet
Overlap genePpp3ca
Upstream geneENSMUSG00000045520, Slc39a8, LOC100039350, LOC383923, Bank1, LOC100039477, LOC668868
Downstream geneLOC668870, LOC100039447, Emcn, EG229862, Ddit4l, LOC668874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271C10.T7 (MSMg01no271_c10.b1)MSMg01-271C10.TJ (MSMg01no271_c10.g1)
ACCAG410784AG410785
length751747
length of high quality
(start - end)
315 (44 - 358)241 (119 - 359)
definitionCHROMAT_FILE: MSMg01no271_c10.b1 PHD_FILE: MSMg01no271_c10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:58 2005CHROMAT_FILE: MSMg01no271_c10.g1 PHD_FILE: MSMg01no271_c10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAACAACTCACTTAAAGAAATACAGGAGAACACTGCTAAAGAGTTACA
AGTCCTTAAAGAAAAACAGGAAAACACTGCTAAAGAGTTACAAGTCCTTA
AAGAAAAACAGGAAAACACAACCAAACAGGTAGAAGTCCTTATAGAAAAA
CAGGAAAACACATCCAAACAGGTGATGGAAATGAACAAAACCATACTAGA
CCTAAAAAGGGAAGTAGACACAATAAAGAAAACCCAAAGTGAGGCGACGC
TGGAGATAGAAACCCTAGGAAAGAAATCTGGAACCATAGATGCCAGCATC
AGCAATTTTTTTCTAGACATCGGACGCACGAGAATCTCAGGTGCAGAAGA
CTCCATAGAGAACATCGGCACAACAATCAAAGAAAATGGAAAATGCAAAA
AGATCCTAACTCAAAACATCCAGGAAATCCAGGACACAATGAGAAGACCA
AACCTACGGATAATAGGAGTGGATGAGAATGAAGATTTTCAACTCAAAGG
ACCAGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAA
AGAAAGAGATGCCCATGAACATACAAGAAGCCTACAGAACTCCAAATAGA
CTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACACCAAA
TGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAG
G
GTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTCTGCTCCTCCGTGTTCCACTTTCTATTTCC
TGCTCTGTGGTGGTGCCCATCAACCCTCTCAGTCTCACGTGAGCGGACTA
CACAGCTTCCTCCGCAGAAGCCACTAAGTAAACACCTCTAGAAGAACGAT
CTATTATTAGCAAAATGCTAATCTGTTAGGAGCAAAATCAGAAGTCCTCC
GCGTTGCCTGGGTGCGTTAAGACATTAGCAAACATCTTGTGAGTGGCTCT
AATGAGAAAAGAGGGTCTGATAATGCGATACCAACTCCAGCTGACAAAGG
AGTGTGTGTTTTTGAGGGCACACCCTGGTCCCAACCATTGTCTTCTGTGA
ACACTGCACCTGGGTGGGACACTAGGGTGAGGGTGCCAGAGAAACACTAG
TTAGAGACCTGGATTCACTGGGAGAGAAAGCAGAACATATCTGTACTTTT
AGATGTATTAAATGCCCAAGAATGCATCCTCGATTCTATATGCAAAACTG
TGACGCAATCCAGAAAGTGAAGGTAATCAGACATTTGCCAGAGTCTGTGA
TCTTCAACACTAATTTTGGCAGAGATTAGCGTTGGCATTTCCACACATGT
TGATTTTCAAGAATAAGATCTTAAAGGGGATTTCTTTATTTATCACATTT
TAATTAAGTACATATTACCAGGCGAGTTACCAAACAATTTATTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_c10.g1 MSMg01no271_c10.g1 CHROMAT_FILE:
MSMg01no271_c10.g1 PHD_FILE: MSMg01no271_c10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:58 2005
         (241 letters)



>mm_chr3_136363393_136364032
          Length = 640

 Score =  426 bits (220), Expect = e-124
 Identities = 235/240 (97%), Gaps = 1/240 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcaaccctctcagtctcacgtgagcggactacacagcttcctccgcagaagccactaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 atcaaccctctcagtctcacgtgagcggactacacagcttcctccgcagaagccactaag 380

                                                                       
Query: 61  taaacacctctagaagaacgatctattattagcaaaatgctaatctgttaggagcaaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 taaacacctctagaagaacgatctattattagcaaaatgctaatctgttaggagcaaaat 320

                                                                       
Query: 121 cagaagtcctccgcgttgcctgggtgcgttaagacattagcaaacatcttgtgagtggct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cagaagtcctccgcgttgcctgggtgcgttaagacattagcaaacatcttgtgagtggct 260

                                                                       
Query: 181 ctaatgagaaaagagggtctgataatgcgataccaactccagctgacaaaggagtgtgtg 240
           ||||||||||||||||||| |||||  |||||||||| |||||||||||| |||||||||
Sbjct: 259 ctaatgagaaaagagggtcagataacacgataccaac-ccagctgacaaacgagtgtgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 640
Length adjustment: 9
Effective length of query: 232
Effective length of database: 631
Effective search space:   146392
Effective search space used:   146392
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)