Query= MSMg01no271_i20.b1 MSMg01no271_i20.b1 CHROMAT_FILE:
MSMg01no271_i20.b1 PHD_FILE: MSMg01no271_i20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:27 2005
(693 letters)
>mm_chr3_130453985_130455077
Length = 1093
Score = 855 bits (442), Expect = 0.0
Identities = 478/494 (96%), Gaps = 10/494 (2%)
Strand = Plus / Minus
Query: 4 ggaattccagcagctaagaagttatgac-agcccacagaaaaggaagttggcaaaatgtg 62
||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 489 ggaatgccagcagctaagaagttatgacga-cccacagaaaaggaagttggcaaaatgtg 431
Query: 63 acactactgggaaataagtgcttctcaaaatgtcctaaccaagcatgtcctccccttcaa 122
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 430 acactactgggaaataagtgcttctcaaagtgtcctaaccaagcatgtcctccctttcaa 371
Query: 123 gacttcattagggagtgacaggaacactaaacattcagttagttcatctaagcttcatgc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gacttcattagggagtgacaggaacactaaacattcagttagttcatctaagcttcatgc 311
Query: 183 tgctgaagtcccatgcatgggtttgcttcttcagaaaggagccagtttcccttcttccac 242
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tgctgaagtcccatgcataggtttgcttcttcagaaaggagccagtttcccttcttccac 251
Query: 243 taccaaagtctgcaccctaactaatcacttcaaaactggtaatttggtgtcttagttact 302
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 taccaaagtctgcaccttaactaatcacttcaaaactggtaatttggtgtcttagttact 191
Query: 303 tttctattcct----gggtttaaaaaacccaccatgatcaaagcctccacccttggtaga 358
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 190 tttctattcctggggggg----aaaaacccaccatgatcaaagcctccacccttggtaga 135
Query: 359 tctcctccaataaggctatgtcccccgctccttcccaaacagttccaccaactgaggacc 418
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 134 tctcctccaataaggctatgtcccccgatccttcccaaacagttccaccaactgaggacc 75
Query: 419 aaatattcaaaccatatgggaggccattctcattccaaccaccacatctgtttgtggaga 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 aaatattcaaaccatatgggaggccattctcattccaaccaccacatctgtttgtggaga 15
Query: 479 gcctagagtggaga 492
||||||||||||||
Sbjct: 14 gcctagagtggaga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1093
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1083
Effective search space: 739689
Effective search space used: 739689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no271_i20.g1 MSMg01no271_i20.g1 CHROMAT_FILE:
MSMg01no271_i20.g1 PHD_FILE: MSMg01no271_i20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:27 2005
(606 letters)
>mm_chr3_130292640_130293647
Length = 1008
Score = 1094 bits (566), Expect = 0.0
Identities = 597/608 (98%), Gaps = 2/608 (0%)
Strand = Plus / Plus
Query: 1 ttggattagtaacgttatgagttaatcttcacaaacagggattccgtggcgttaaggggg 60
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 201 ttggattagtaacgttatgagttaatttttacaaacagggattccgtggcgttaaggggg 260
Query: 61 aaaagggggagccaggccagcctggcctggatgggctggatgctccttgccaattggtac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaagggggagccaggccagcctggcctggatgggctggatgctccttgccaattggtac 320
Query: 121 agtatttctctttcctaccatcatcctgcatgccattcctctgtctactttgtactcgtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtatttctctttcctaccatcatcctgcatgccattcctctgtctactttgtactcgtc 380
Query: 181 tatatcagtgtaaagtgcttctttctggagccagctttacatgataaacatactacatgt 240
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtatcagtgtaaagtgcttctttctggagccagctttacatgataaacatactacatgt 440
Query: 241 gtgtgcatgagcaggctcctccctgggctctgcttcggggagagagcaagcatgtattat 300
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 gtgtgcatgagcaggctcctccctgggctctgcttccgggagagagcaagcatgtattat 500
Query: 301 caatgagtgtatattaatcttctaacattgttctcactactgatgtgtctatcttatatt 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 caatgagtgtatattaatcttctaacattgttctcactactgatgtatctatcttatatt 560
Query: 361 ctttggaatattaatttacccaatatatattcagaggtgatttgtaagttagataaaaat 420
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 561 ctttggaatattaatttacccaataaatattcagaggtgatttataagttagataaaaat 620
Query: 421 atataacgcaatgacactgctaggccagaactttgggcttttaccctacttattttttt- 479
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 621 atataacgcaatgacactgctaggccagaacttggggcttttaccctacttatttttttt 680
Query: 480 -cccaatcctctaaaagaaagaaaagtatttttgtctcccccatgatagtcttatcagtg 538
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tccctatcctctaaaagaaagaaaagtatttttgtctcccccatgatagtcttatcagtg 740
Query: 539 cataaataaggccagttgtacattatgacttctgtggtcaagaattaaccaatttgaagc 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cataaataaggccagttgtacattatgacttctgtggtcaagaattaaccaatttgaagc 800
Query: 599 aacactgt 606
||||||||
Sbjct: 801 aacactgt 808
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1008
Length adjustment: 10
Effective length of query: 596
Effective length of database: 998
Effective search space: 594808
Effective search space used: 594808
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
