BAC Information

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BAC

Clone NameMSMg01-272D01
Chromosome3 (Build37)
Map Location 32,567,572 - 32,568,273
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC625125, Kcnmb2, LOC665514, Zmat3, 4930429B21Rik, Pik3ca, Kcnmb3, Zfp639, Mfn1, Gnb4, LOC100040977
Downstream geneActl6a, Mrpl47, Ndufb5, Usp13, Pex2, EG545512
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272D01.T7 (MSMg01no272_d01.b1)MSMg01-272D01.TJ (MSMg01no272_d01.g1)
ACCAG411543AG411544
length750823
length of high quality
(start - end)
706 (40 - 745)284 (68 - 351)
definitionCHROMAT_FILE: MSMg01no272_d01.b1 PHD_FILE: MSMg01no272_d01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:16 2005CHROMAT_FILE: MSMg01no272_d01.g1 PHD_FILE: MSMg01no272_d01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
GTGATGAGCATTTGGCCTCTATCTCTCCAGAGTCTCCAGAGGCTTTTTCT
GCCTCTTTCCTTCTGACTCCACGTGCACACACGGCCAAGTGTGCCTCCCA
TACTTACGGCACCAGCAGTTTCTGGATGAGAGAAAGCCAAGTCTGCCCTT
CATCCTGATGCCACACACCTCCCTTTTGGATAGCTCTTCGTTCTTTCATT
AACCCAGCAGGGTTTTGGTATCTTCATTGCAGAAGTCAGAACCATGTAGC
TGGAACAAGGCCATTTTCAAGCTCTAGACTGAGTTATGTAAACTCCAAAA
AGCAGGGGACAACATTTTCTTCCTCTTTCTCAGGTTAGTTCTTTTGGTGA
TGCCTCCAGTGCTACCTATAAAAGATCCTATAGACGCAGTTCTGAGCTGC
AGGGGAATAAATGGGATCAAACTGCTTTTAGGATCAAACCCAAGAAAAAG
TAGATTTCTATTTGACTAGTACGACGGACTTTACAGGGTGCGTGGGCTTA
AATGAACTGGGGGAGTGTAGCGAGCAGCTCTGCAAGACAGGAGGGGAAAA
ATGTAAGTGTAGGCACTAAATATGCACTGCTTTGGAAAAGAGGTCTTTAG
GAGTGGAATGGTTAAAGAACAGAGGACTGGCTGTGTCTGGAGGGAGTATT
TATGCCGGGAGACAGGAAGTGTGAAGTCAATGACTTGTGCTGGCAGAAAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCGGGTTGGTGCCAGCTTTATTTCCCTATGTCAT
ATGAATCAAGTATGTGGCCCTTAGCAATAATGCCTTACCTTTAAGCTCTA
GAAGGTAAGCAAGAGGAATGCAATAGTCTATAATATTGGGGGGGGGAGGC
TATGTGAATTTACTGATCAATGAATGACTCAGAAAGTTATGATACTCTAT
ACATGACATTGGGTTATTTTATTTGATAGCCTATGGTATCTGGGAAAAAA
CACTGTCCCCCTATTATAGGATAATTCCATTTGGGCTGTTTGTGTGTGTG
AGTGTGTGTGAGTGAGTGTCCCCCGCACGCCCGTGAGATTAAAAATAAAT
TAATTTTTTTTTCCCCCCTCTCAAAAAAAAAAAAAAAAAAATTTTGTGTG
TGTCCTTCCCCTCTTTCTTTAATTCCTCCTATCATTTCTTCTAATCCCAT
ATATTTCTCTTTTATTTTTTTTCATCCTTTTCTCTCTTCTTCCTTTTTTC
TTTCCTTCTATATTTTTACATTTCCCCTTTTTTATTTTCCTTTTTTCTTC
CCGCACCTCACTACAGATACGTTACACCTCCGCCTTTATTTTTCTTTATC
TTACTCATTCCTTTTTTTATTCTACTCGCCTCATATCTCTTCCCATTTTC
TTTCTTTTATTTTTACCTCATCATTTTACTCTTACATTCTATTTTTTCTA
TTAATTATGATCTTCTTTTCTCATCTACTTTACTCCATCGCTTCTCTTCT
TTCCCTCCTCATTTATTTATTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_d01.b1 MSMg01no272_d01.b1 CHROMAT_FILE:
MSMg01no272_d01.b1 PHD_FILE: MSMg01no272_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:16 2005
         (706 letters)



>mm_chr3_32567369_32568473
          Length = 1105

 Score = 1321 bits (683), Expect = 0.0
 Identities = 698/703 (99%), Gaps = 1/703 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgtgatgagcatttggcctctatctctccagagtctccagaggctttttctgc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgtgatgagcatttggcctctatctctccagagtctccagaggctttttctgc 263

                                                                       
Query: 64  ctctttccttctgactccacgtgcacacacggccaagtgtgcctcccatacttacggcac 123
           ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 264 ctctttccttctgactcca-gtgcacacacggccaagtgtgcctcccacacttacggcac 322

                                                                       
Query: 124 cagcagtttctggatgagagaaagccaagtctgcccttcatcctgatgccacacacctcc 183
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 323 cagcagtttctggatgagagaaaaccaagtctgcccttcatcctgatgccacacacctcc 382

                                                                       
Query: 184 cttttggatagctcttcgttctttcattaacccagcagggttttggtatcttcattgcag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cttttggatagctcttcgttctttcattaacccagcagggttttggtatcttcattgcag 442

                                                                       
Query: 244 aagtcagaaccatgtagctggaacaaggccattttcaagctctagactgagttatgtaaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aagtcagaaccatgtagctggaacaaggccattttcaagctctagactgagttatgtaaa 502

                                                                       
Query: 304 ctccaaaaagcaggggacaacattttcttcctctttctcaggttagttcttttggtgatg 363
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 503 ctccaaaaagcaggggacaacattttcttcctctttctcaggttagttgttttggtgatg 562

                                                                       
Query: 364 cctccagtgctacctataaaagatcctatagacgcagttctgagctgcaggggaataaat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 cctccagtgctacctataaaagatcctatagacgcagttctgagctgcaggggaataaat 622

                                                                       
Query: 424 gggatcaaactgcttttaggatcaaacccaagaaaaagtagatttctatttgactagtac 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 623 gggatcaaactgcttttaggatcaaacccaagaaaaagtagatttctatttgactagtat 682

                                                                       
Query: 484 gacggactttacagggtgcgtgggcttaaatgaactgggggagtgtagcgagcagctctg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gacggactttacagggtgcgtgggcttaaatgaactgggggagtgtagcgagcagctctg 742

                                                                       
Query: 544 caagacaggaggggaaaaatgtaagtgtaggcactaaatatgcactgctttggaaaagag 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 caagacaggaggggaaaaatgtaagtgtaggcactaaatatgcactgctttggaaaagag 802

                                                                       
Query: 604 gtctttaggagtggaatggttaaagaacagaggactggctgtgtctggagggagtattta 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 gtctttaggagtggaatggttaaagaacagaggactggctgtgtctggagggagtattta 862

                                                      
Query: 664 tgccgggagacaggaagtgtgaagtcaatgacttgtgctggca 706
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 tgccgggagacaggaagtgtgaagtcaatgacttgtgctggca 905


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1105
Length adjustment: 10
Effective length of query: 696
Effective length of database: 1095
Effective search space:   762120
Effective search space used:   762120
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)