BAC Information

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BAC

Clone NameMSMg01-272E18
Chromosome3 (Build37)
Map Location 139,376,176 - 139,376,445
singlet/doubletsinglet
Overlap genenone
Upstream geneTspan5, LOC620771, Rap1gds1, EG229879, B930007M17Rik, LOC100039840
Downstream geneLOC229883
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272E18.T7 (MSMg01no272_e18.b1)MSMg01-272E18.TJ (MSMg01no272_e18.g1)
ACCAG411620AG411621
length570688
length of high quality
(start - end)		91 (22 - 112)270 (75 - 344)
definitionCHROMAT_FILE: MSMg01no272_e18.b1 PHD_FILE: MSMg01no272_e18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:25 2005CHROMAT_FILE: MSMg01no272_e18.g1 PHD_FILE: MSMg01no272_e18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAAATTTGGGCGCTATACATCCTATAGGGAGAGGATCCGCGGAATTCTTT
GTTTAGCTCTGTACCCCATTTTTAATAGGGCTTTTTGATGTTTCTGGAGT
CCAACTTCTGAGTCTTGATATATGAATAGCCCTACGATTAGATGTAAGAC
TTTCCATCTGTGTGCTTTGCTATGATGACCTTGCTACGAACTTGATTTAA
GAGCCTTTCCTTTTGAGCCCTTTTGTTTAAAGCAAAATTGGTGTCGGCAA
AAATTTTCCCGGGGAAACCTCAAGGCTCTGGTTTTTTTCCCCCCCCCCCC
CAGGGGTTTGGTTTTAGGGGGGGGTCTCTTCCCCCCCCTATAAAAAAAAA
TTTTCTTCCGGGGCCAAAAAAAGGGGCTTTTTTCCCCCTCCCTCGCGCGG
GGGAGAAAAAAAAATAAACAAACCCCCCCTTTTTCTCGCCGGGGGCCTCT
TTGGTGTAAACTTTTTTTTTTTTTTTTTTTTTCCCCTCCTCCCCCCTCTT
GTGTCATAAACTTTTTGTTTATTTTTTCCCTCCCTTGTGGGGGTGGGCCA
CCAAAACCCACCAGAGTTTG

CGAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTTCCTTGACTTTTTCTGCTTTTAT
GTTCTTTGTGCCTATTTTTAGTTTATTAATATTTCTAATTTTGTATAATA
GCAGTAAAGTACATGTGTCCGTGGAGGAGAAACATTTTAAAATTTACTAA
GCAATTTATTAAATGGCATTATTCAAAGTAAACTTGTGCTTATTTCCTTT
GTCTTCTCTATTTGAATAGCTTGAACTTCATTCCCTGTCGTATACTATCT
GACTATTAATTTAACAACTTCTCCTTATAATCTATTACGTCATTTAANAA
AGACCCCTTATTTTTGAACAACCCCCCCCCGCTCCATGGAAAAAAAAAAA
TCCCCCCGGAATTAAAAACTTTTTTAATTTCTCAAAAAAAAACACCAAAA
ATTGTTTTTTTGGTGGTGCCCCCCCTCCCCGGGGGGGGGAAAAAAAACCC
CCCCCCTCTAAAAAAAAAAATCAGCCGCGGGGGGGGCGCTTTCTTTTGTG
TGTTATCCCCCCTTTCTTTTATACCCCCTTGCCCCCCCCCCCCTTTTTTC
TTTTTTAAAATTATTTGCGCCCCGCCCCCCCACAAAAAAAAGATTTTTTT
TTCTCTTTTATAAAAAAAAAAAAAAAATACCCCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_e18.g1 MSMg01no272_e18.g1 CHROMAT_FILE:
MSMg01no272_e18.g1 PHD_FILE: MSMg01no272_e18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:25 2005
         (270 letters)



>mm_chr3_139375976_139376645
          Length = 670

 Score =  514 bits (266), Expect = e-150
 Identities = 269/270 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttccttgactttttctgcttttatgttctttgtgcctatttttagtttattaatattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttccttgactttttctgcttttatgttctttgtgcctatttttagtttattaatattt 260

                                                                       
Query: 61  ctaattttgtataatagcagtaaagtacatgtgtccgtggaggagaaacattttaaaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaattttgtataatagcagtaaagtacatgtgtccgtggaggagaaacattttaaaatt 320

                                                                       
Query: 121 tactaagcaatttattaaatggcattattcaaagtaaacttgtgcttatttcctttgtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tactaagcaatttattaaatggcattattcaaagtaaacttgtgcttatttcctttgtct 380

                                                                       
Query: 181 tctctatttgaatagcttgaacttcattccctgtcgtatactatctgactattaatttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctctatttgaatagcttgaacttcattccctgtcgtatactatctgactattaatttaa 440

                                         
Query: 241 caacttctccttataatctattacgtcatt 270
           |||||||||||||||||||||||| |||||
Sbjct: 441 caacttctccttataatctattacatcatt 470


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 670
Length adjustment: 9
Effective length of query: 261
Effective length of database: 661
Effective search space:   172521
Effective search space used:   172521
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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