BAC Information

Click to search

BAC

Clone NameMSMg01-272F08
Chromosome3 (Build37)
Map Location 17,498,952 - 17,499,244
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040034, LOC100040059, EG383936, LOC622737
Downstream geneENSMUSG00000074674, LOC100040120, Cypt12, LOC545508, Bhlhb5, Cyp7b1, LOC622921, LOC100040153
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272F08.T7 (MSMg01no272_f08.b1)MSMg01-272F08.TJ (MSMg01no272_f08.g1)
ACCAG411648AG411649
length762759
length of high quality
(start - end)
297 (60 - 356)293 (66 - 358)
definitionCHROMAT_FILE: MSMg01no272_f08.b1 PHD_FILE: MSMg01no272_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:28 2005CHROMAT_FILE: MSMg01no272_f08.g1 PHD_FILE: MSMg01no272_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGGAC
CATATCCAAAAGATTATCCATCAAAATCAAGTAGGCTTTATCTCATGGAT
GCAAGAATGATTGAACACATGTAAATCAATAGATATAACCCACTATATAA
ATAGACTCAAAAAGTGTAAGTCACATGACCATTTCATTAGATTCAGAAAA
GACTTTTGACAAAGTGCAACATACTTTCATGGTAAAAGTCTTGGAGAATA
TAGGAGTATAAGTTACAAAGTATAATATAATAAACACCATTTTATCCAGC
TCCCAGCCAGCATCATTCTGAATGAAAGTAAACTCAAAACGTTTCCACTA
AAATTATTATTAAAACACAACTGCCAACTCTTCCTGTTCAATACAGTGCT
TGAAGTCTTAGCTAAAGAGAAGGAGGGAGACACAAGAATATAAATAGGAA
AGAAAGAAATCAAAGTATCCTTATTTACATGTGATAGGATTCTATACATA
AAAGATCCTAAATTTGCCAACAGAATAGTCTTACTAGTAAGAAACACATT
TAACAAAATAGCGAAAAAAAAAAATCCATGCGTAGAAACTAATAGTCTCC
CATATACAAATGACAAGCCCACAGAGAAAGAAATCAGGGAAATAGTGTCA
TTCAAAATAGCTTTAAAAATACATTGAAGTCAATATAAAAAGGAAGTAAA
AACAATCAAACCAACCAACTAACAGAAACAGAAACAGAAATCATTTGCAA
TAGAATCTTTAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXACCTGGATACAATCCAATCAGACGAAACATCACAG
AGAAAACACAATCACGGCTGTCTTAATTTTGAGCCCATTTCTTTATTAGT
AAATCTTTCACTTACCCATCTGTTGTGACAGATTTTCTTAAAAATATCCA
TTTTGTGTTTGTGGCTACAGAAGATAAATGGAATACAGAGGATAATGGAA
GTGACATTGAGCTACTAAGATTTGTAATTAGTATTCTGATTATTGTTTTG
TCAATTTGACACAAGTTAGAGTCATCTGGGAAGAGTGGACCTCAACTGAA
AATTATCTTCATCCACACACCCCTATCTACAAGACTGGGAGGACATTTTC
TTGACTAATAATTGACATAAGAGGACCACTGTAGTCAGTTTCTACCACTG
GGCCAGTGGTCCATGGTGGTTTAAGAAAGCAGACTGAGCAAGCCAGGGAG
ACAAGCTAATAAGCCCCATTCCTCCATGGCCTCTATGTCAGTTTCTGCCT
CCAGGACCCCTACCTTAAACTCCTGTCCTGACTTCTCTTATGATGGACTA
CAAATTGAAAAAAAAAATCCTTTTTTCCTTCAAATTGCTTTTGGCTATTG
GGTTTATGACAATATTAAAAAGAAAACCAGCACAGTTCTCTATTTCATTG
AAGGATGAGGCTAAAATTACTTGCTTTATATCCAATTTTGGCCATTGATT
ATATAAGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_f08.g1 MSMg01no272_f08.g1 CHROMAT_FILE:
MSMg01no272_f08.g1 PHD_FILE: MSMg01no272_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:28 2005
         (293 letters)



>mm_chr3_17498752_17499444
          Length = 693

 Score =  567 bits (293), Expect = e-166
 Identities = 293/293 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   acctggatacaatccaatcagacgaaacatcacagagaaaacacaatcacggctgtctta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acctggatacaatccaatcagacgaaacatcacagagaaaacacaatcacggctgtctta 260

                                                                       
Query: 61  attttgagcccatttctttattagtaaatctttcacttacccatctgttgtgacagattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attttgagcccatttctttattagtaaatctttcacttacccatctgttgtgacagattt 320

                                                                       
Query: 121 tcttaaaaatatccattttgtgtttgtggctacagaagataaatggaatacagaggataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttaaaaatatccattttgtgtttgtggctacagaagataaatggaatacagaggataa 380

                                                                       
Query: 181 tggaagtgacattgagctactaagatttgtaattagtattctgattattgttttgtcaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggaagtgacattgagctactaagatttgtaattagtattctgattattgttttgtcaat 440

                                                                
Query: 241 ttgacacaagttagagtcatctgggaagagtggacctcaactgaaaattatct 293
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgacacaagttagagtcatctgggaagagtggacctcaactgaaaattatct 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)