BAC Information

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BAC

Clone NameMSMg01-272I08
Chromosome3 (Build37)
Map Location 28,446,322 - 28,446,499
singlet/doubletsinglet
Overlap geneTnik
Upstream geneFndc3b, E030011K20Rik, Pld1
Downstream geneSlc2a2, EG624446, Eif5a2, Rpl22l1, Gm1527, 6130401L20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272I08.T7 (MSMg01no272_i08.b1)MSMg01-272I08.TJ (MSMg01no272_i08.g1)
ACCAG411780AG411781
length832741
length of high quality
(start - end)
182 (46 - 227)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no272_i08.b1 PHD_FILE: MSMg01no272_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:42 2005CHROMAT_FILE: MSMg01no272_i08.g1 PHD_FILE: MSMg01no272_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATCATTCAAGTGCTCGAAGACCAAGTACTCTTCTGCATTCCAGGA
TATTTGCAGACTGACCACCACCCCATTGTGTATATGCATGTGCACATGCG
TGCATGTACGTGCATACATGTGTGTATGTGTGTATGTGTGTACGTGTGTA
TGTGTGTATGTATGTATGTGTGTATGCTTGTATGTATTCGCTCCCTCCTC
CCTTTTTTCTCCTACCTTTCCTCCTTTCTTTTTCTCCCTCTATTTCTTCT
ACCTCTCTCCCCCTCTCTTCTTTTTTTTTTTCCCTCCTACTTCCCCTATC
CCTCCAAATTTTTTTTATATTTCCCCGAAACTAACCCCCTTTTTTTTATT
ACTTTTATTTTTTTCTCCCTTTCCTCCCCCTCTATAAAAACAAACAATTT
ATCCTTCGTTCCGGCTCTGTTTTTCCTCCTTTTTTCCTTCCCTCTTTTCT
TCCTTCCATTCCTCTTACCTTTCTTCTTCTATTTTCTCCTTTCTCTATCT
CCTTTTTTCGATCTTTCTCTTCTTTTTCTAATCTCCCCTATTTCTCTTTC
TCTCTTCTTCCCCCCCCCCTCTCTCCCTAATTTTCTCCTTTCTTTCTTTC
TTTTTATCCTCTTATTCCTCTTTATTTTACCGCCCTTCTTCTTCTCTTTT
CCTCTTAATTTTATCATTTCTTTCTCTTTCCTTTTTTTCCTTTCTCTTTA
TCCTATTCCCATTCTCTCTTCCCTTATATATAAACCCTCTTCTCCTTTTT
AATTATTTTTTTACCCCTCCTTCTCTTTTTAT
CCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTTATGTTATGATGCTGAGAGTT
GGGTTGGGGGAATATCTATCAATTCCAGCAAGTAGAATGAGCTCTGCTAC
TACAGTTTTCTGCTATTCTCATCTGCATTCCGCCTACACTGTCACTGAGA
ACATTTCTTAAGCCAATTGGCTTTTTACAATTTTTTTAAAGAAAGAAAAC
TATATATCTTTACCATGAATTGGAAGCAATAACATTGCAAAATGCAAGGC
AACTAAAACCAGATAAAAACCAAGTGATATTGCTCTTCTCCATCTAGAAA
CTACTTCCCCAAGAAATTTCTTCACCCCCCCACTGCCGTTCAAAAGGAGA
ACATTAGGCCCTATTAGGAACGTGTGAAAGGAATATTAACACCAAGCTGA
GATGTATTCCTTGACAGAATCAGAAGAGTTGAAAACACGTCAGTGTCACT
GTGTTTCGGTGCTGTTTAATGTGGTGTCTTGGTCTCCTGAAGCTGTCTGC
TTCTATCATCAGTATGATACCTTCACTTGGGAATCACGACTTTCTAAGCA
CTAATAATGTAAATGAGTTGAAGCGTGCCATATATGATGCTTGCTTGCCA
TAGGACGTAAACCAAAGGGTCTCTGCTATATGTGTATATAGATAGAACCT
CATATAGACGTCAGCTGGCCATGTATGTCATTTACCCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_i08.b1 MSMg01no272_i08.b1 CHROMAT_FILE:
MSMg01no272_i08.b1 PHD_FILE: MSMg01no272_i08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:42 2005
         (182 letters)



>mm_chr3_28446178_28446759
          Length = 582

 Score =  344 bits (178), Expect = 2e-99
 Identities = 178/178 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatcattcaagtgctcgaagaccaagtactcttctgcattccaggatatttgcag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gaattcatcattcaagtgctcgaagaccaagtactcttctgcattccaggatatttgcag 263

                                                                       
Query: 65  actgaccaccaccccattgtgtatatgcatgtgcacatgcgtgcatgtacgtgcatacat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 actgaccaccaccccattgtgtatatgcatgtgcacatgcgtgcatgtacgtgcatacat 203

                                                                     
Query: 125 gtgtgtatgtgtgtatgtgtgtacgtgtgtatgtgtgtatgtatgtatgtgtgtatgc 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gtgtgtatgtgtgtatgtgtgtacgtgtgtatgtgtgtatgtatgtatgtgtgtatgc 145


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 182
Length of database: 582
Length adjustment: 8
Effective length of query: 174
Effective length of database: 574
Effective search space:    99876
Effective search space used:    99876
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)