BAC Information

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BAC

Clone NameMSMg01-272M09
Chromosome3 (Build37)
Map Location 24,351,988 - 24,352,273
singlet/doubletsinglet
Overlap geneEG635702
Upstream geneLOC100039548, EG665189
Downstream geneLOC100039592, Nlgn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272M09.T7 (MSMg01no272_m09.b1)MSMg01-272M09.TJ (MSMg01no272_m09.g1)
ACCAG411962AG411963
length734726
length of high quality
(start - end)
317 (45 - 361)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no272_m09.b1 PHD_FILE: MSMg01no272_m09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:00 2005CHROMAT_FILE: MSMg01no272_m09.g1 PHD_FILE: MSMg01no272_m09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:00 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTCAACTTCGCCCATGTTGCACTACCTTTAGAGTCAATAGTTAATG
AGGTTACTGGGATAATTAATCCTAGCTGGGGCTAGGAAATTAGTGGTGAT
TAAGAAGATATCAACATCATGGCTGACATGAAATATTCTGGGAAATATTT
TCTGAGAAAGCCCTGTTTTAAAGATAACCAAGGGTATACCTCATGCTGCA
ACTGAACTTGGGAATGTGTAAGAATCACCCAGGTGATCCTAGGTTGACTG
AAAGTATTAAGGGTTCATGGAAAGCAGCTGAGGCATGGCACTCTGAGCGG
CCAGAAAATGTCATTGTTGACACACGCACCTCAGTTGCAGTTGATGGCCT
AGGACGTAAATGGTCAGCCAAAGAATGTGGGGCTTGGCAGCATGGTGAAT
GCCTATTTATAGGCTATATTGTGAAGACTCATCTCAGCAGAAGACCTCAG
AGTATTGGAGAGGCCAGTATCAAAGGATGACCTCTAAGAACAGCAATAAC
AAAGGAGTAGTCAACCAGAGGCTATAGTGCTCTCTTAGAGGGCATAGCTG
GAGGAGTGCCCCAAGCCCTTTGGAGGATCACAGGACCTCTATAACTGTAA
GCTTTTCCCAATTAAATGTTTGCAATTATAAGTAACCATGGTCATAATGT
CTCCTCACAGCAACAGAAACCAGAACATCGTTTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAAATTAAATTATTTACAAAGGGA
TTTCTGTAGTGACATTAAAAAGCAAAATTTTTATTTAATTGGGTTTTGTT
TAATTTTTTTCTGAATCTGTTCTCTTTTCTCTATTTTCAGTGTGCTTTAT
GAATAGGATGAAATAGTAAAAATAACATTAAAAATGTTTATTATGAAATA
ATTTAAAATAGGAAATATTCATTTTTGTTTTAGGACACAGTGTATAGGTC
TATTGCATTTTTCAGTAACAATAAAAGACATTGCTGATAAAGCTAAAACA
TGAAAAAATTAATTACTTGTATGCATATTCACACACATATATACATACAT
ACATACATACATACATATATACATATGTTTCTATATATATGTGTGAATAT
ACACATACATAGACAAGTACACATATACTATACACACACATACACACACA
CACACACACACCCCTATCTTTCTCGCTCTTCACTATTATCGTTCCCTTAA
TCACACCAAAATCCATTAATCTCTCTTTCTCCCTCCTCCTATCCATAGGT
CTCTTCCTCTTTCTTATAGTCTTCTTTCTAGTTCTATGTCATGATCAAAT
GAGTACTTGGGATTTTTCTGTTCTTTCTGTATTTTGGACATTGATACAAT
TTATAGGCTGACCGCGTAGAGGCGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_m09.g1 MSMg01no272_m09.g1 CHROMAT_FILE:
MSMg01no272_m09.g1 PHD_FILE: MSMg01no272_m09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:00 2005
         (287 letters)



>mm_chr3_24351604_24352290
          Length = 687

 Score =  545 bits (282), Expect = e-160
 Identities = 285/286 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaattaaattatttacaaagggatttctgtagtgacattaaaaagcaaaatttttattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 aaaattaaattatttacaaagggatttctgtagtgacattaaaaagcaaaatttttattt 611

                                                                       
Query: 61  aattgggttttgtttaatttttttctgaatctgttctcttttctctattttcagtgtgct 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 610 aattgggttttgtttaatttttttctgaatctgttctcctttctctattttcagtgtgct 551

                                                                       
Query: 121 ttatgaataggatgaaatagtaaaaataacattaaaaatgtttattatgaaataatttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ttatgaataggatgaaatagtaaaaataacattaaaaatgtttattatgaaataatttaa 491

                                                                       
Query: 181 aataggaaatattcatttttgttttaggacacagtgtataggtctattgcatttttcagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 aataggaaatattcatttttgttttaggacacagtgtataggtctattgcatttttcagt 431

                                                         
Query: 241 aacaataaaagacattgctgataaagctaaaacatgaaaaaattaa 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 aacaataaaagacattgctgataaagctaaaacatgaaaaaattaa 385


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)