Query= MSMg01no272_o11.b1 MSMg01no272_o11.b1 CHROMAT_FILE:
MSMg01no272_o11.b1 PHD_FILE: MSMg01no272_o11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:10 2005
(520 letters)
>mm_chr3_148849081_148850000
Length = 920
Score = 934 bits (483), Expect = 0.0
Identities = 507/515 (98%)
Strand = Plus / Plus
Query: 5 gaattcctgctggaaagggttcagaagaacattcttgtccttgtagaaggcgtcaccgcc 64
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgctggaaagggttcagaagatcattcttgtccttgtagaaggcgtcaccgcc 264
Query: 65 tgccttcccctgccgagagaatgcatcgcctccatgatgcgctcagaatagtataaaaga 124
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgccttcccctgcggagagaatgcatcgcctccatgatgcgctcagaatagtataaaaga 324
Query: 125 taaggcttggaaggccacaagctaggccacagcagcatcgaatggaaggacgcttactgt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 325 taaggcttggaaggccacaagctaggccacagcagcatcgaatggaaggacgcctactgt 384
Query: 185 agtccctaaataatttatggtaaaattgtttcattaacaatgcgataacctcattctgct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agtccctaaataatttatggtaaaattgtttcattaacaatgcgataacctcattctgct 444
Query: 245 attcaacacaaacttattaaagcatagacaagagtgactttagtaactagtgaaggaggt 304
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 445 attcaacacaaacttattaaagcatagacaagagcgactttagtaactagtgaaggaggt 504
Query: 305 ttggaatatgacaattccagtgatctagctctgtcatcgggcaaatgtcagctctcatca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttggaatatgacaattccagtgatctagctctgtcatcgggcaaatgtcagctctcatca 564
Query: 365 gcagccacccgccaaaggtaacacacagagaggtgacaccttctctttgcttccctgtca 424
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gcagccatgtgtcaaaggtaacacacagagaggtgacaccttctctttgcttccctgtca 624
Query: 425 tggtctttacctttatataccagattccaggtacccaaattctgtcttgttttctttctg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tggtctttacctttatataccagattccaggtacccaaattctgtcttgttttctttctg 684
Query: 485 tccccaccaaggactatgtgtaaagtatgggaggg 519
|||||||||||||||||||||||||||||||||||
Sbjct: 685 tccccaccaaggactatgtgtaaagtatgggaggg 719
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space: 464100
Effective search space used: 464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no272_o11.g1 MSMg01no272_o11.g1 CHROMAT_FILE:
MSMg01no272_o11.g1 PHD_FILE: MSMg01no272_o11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:10 2005
(576 letters)
>mm_chr3_149026947_149027923
Length = 977
Score = 1031 bits (533), Expect = 0.0
Identities = 566/577 (98%), Gaps = 1/577 (0%)
Strand = Plus / Minus
Query: 1 cttctgcatggtgccattgcccttcaccttcctatactgtttgcttgccgttagaaagaa 60
|||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 777 cttctgcacggtgccattgcccttcaccttcctatactgtttgcttgtcattagaaagaa 718
Query: 61 cttttagctatcaacttcaataaatacctggttgcccatgagataactgggcaaatccat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 cttttagctatcaacttcaataaatacctggttgcccatgagataactgggcaaatccat 658
Query: 121 ctttagctacctgtttgaactcactaggcagtaaggcgttgtctatttaagcaaataaaa 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 657 ctttagctacctgtttgaactcactaggcagtaaggtgttgtctatttaagcaaataaaa 598
Query: 181 cccaaatgattgtgctctattttgaacttttatatcccacatagaagaaacacaaatgta 240
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 cccaaatgattgtgctctgttttgaacttttatatcccacatagaagaaacacaaatgta 538
Query: 241 tattatgcttacacccatagaaacatcccccaaaatacaatc-cctgttatgtcatagag 299
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 537 tattatgcttacacccatagaaacatcccccaaaatacaatcacctgttctgtcatagag 478
Query: 300 gacaaataatatagtcaaattctcaactaaaggattaagtgacatctgattagtttaagt 359
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 477 gagaaataatatagtcaaattctcaactaaaggattaagtgatatctgattagtttaagt 418
Query: 360 agacaagggcagacttggtaagcgggtggcacacattctttccaaacagccaaatcgtgc 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 417 agacaagggcagacttggtaagcgggtggcacacattctttccaaacagccaaatcgtac 358
Query: 420 tccctgtcttctttctcaaataccagggaaacccagtctctttccttgactaggtgccaa 479
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 357 tccctgtcttctttctcaaataccagggaaatccagtctctttccttgactaggtgccaa 298
Query: 480 gacagctatcaccctagactggggcaggcatctattgagagctttgcagcttttctcaga 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 gacagctatcaccctagactggggcaggcatctattgagagctttgcagcttttctcaga 238
Query: 540 cctgcgctctctccagtgagtgggtcacatacacaga 576
|||||||||||||||||||||||||||||||||||||
Sbjct: 237 cctgcgctctctccagtgagtgggtcacatacacaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 977
Length adjustment: 10
Effective length of query: 566
Effective length of database: 967
Effective search space: 547322
Effective search space used: 547322
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
