BAC Information

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BAC

Clone NameMSMg01-273F12
Chromosome3 (Build37)
Map Location 129,033,623 - 129,033,907
singlet/doubletsinglet
Overlap geneEnpep
Upstream geneLOC100043393, EG668831, Pitx2
Downstream geneLOC100043415, LOC435755, LOC668840, Elovl6, LOC100043758, Egf, Gm421, Rrh, Nola1, Cfi, Pla2g12a, Casp6, Ccdc109b, Sec24b, EG668844, EG668845, Col25a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273F12.T7 (MSMg01no273_f12.b1)MSMg01-273F12.TJ (MSMg01no273_f12.g1)
ACCAG412372AG412373
length724725
length of high quality
(start - end)
252 (63 - 314)285 (71 - 355)
definitionCHROMAT_FILE: MSMg01no273_f12.b1 PHD_FILE: MSMg01no273_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:42 2005CHROMAT_FILE: MSMg01no273_f12.g1 PHD_FILE: MSMg01no273_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
CTGGTAATACTCTTACAATTTCCTGATTGTTCCATGATCCAGCAGACTAA
TTTGCTATGTATTAAAATGCATATTCCATAGCAAGCTAGTTACCGTGGCA
TGCCTTTAATCCCAGGTCTTGGGAGGCAAAGGTAGGTGGATCTCTATGAG
TTTGGAACCAACCTGTTTTACTTGAGTTCCAGGCCAGTTAGGGCTACATA
GTGAGATCTTATCCACAGAATAGGTTCAAATCTGGCCTCAGCTGGCCTTG
GCTTTGAACCAAGAATCTTTAGAATGAAAAGGAACCCTCATATATCACAT
ATGTCTTGATGAATTCCNNTGCAGNACCCTTACTAGTAATTAATTTCCTT
TATGAGAAACTGCTCTTCTTGAGTAATAAAGAAATATGGAGCCAGGTAGA
ATGCGTGGATAACCTTAGCCAGATTTTTCAGATGCTAGTAGCTGATCAGT
TTAGGTAAGACTGGCTTTGGACCTTGTAATCAATATGGAATTGTATCTGT
TTGAACCGAAAGCAGAACCATCCTGCTAACCACCAATGAAAGGTAGGCGG
GTAGACCATCGTAAGCATTAGCATGACCTACAACTGAAGTTTAAATCCAG
ACTGCTGGGTGTTTAAAGCACTTGGCAGATGTTATGTGGAAGACAGTTAT
TCTAGAATCTTGTCCAGGCGTTTG
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAAGGAAGGAGCTTACACCGTTTACCAAGAA
CTGATAAAAGCCACTGGGCCACGTGAATATCAGATAGAAAGTAATAGATT
AGGTAGAATATATTAGTTTTATAATTATAATTATTTAATGTATATTTTAA
ACACTTCTGCTTGGGACACTGCAGGGAAGAAAAACACTTGTGGCTGCCTG
TTATGTGGTAAAGGCTTGGTTAGCATTACTACTGCCTGCTTAGTGATAGT
TGGCAGCTCCAAGGTTTATCCTTATGCCATCACTGATCCAGGTTTTAAGC
ATTCCCCTTAAGTCNNACCCACAACATACCCCTGATCACAGAAGAAGAGA
AAACACAGCCAGGCTTTTCTTCTTAGAAGAACACCTAAGGACCCGTCATA
TCTTTTGTAATTTTCGTTACGATTCTTCTCCAGTAAACTGCACGAAATAA
CAATTGACACTTAATGTAATTGTCATTGCAAATGAAATTGTCATCCCTTG
TGACATCACTGTGATATAGCCCCAAAACACCAGTGGTGAAATTTATCAAA
TACTTATATTCATAAACCTCTGAGGCACTTTGTGTGTATGTGTAGAGTCA
GATGCAGTTGCGATTTACCCGGTGTCATTAATAAATTCTCTACAACTGGC
ATTGTATTTACAATTATTCACTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_f12.g1 MSMg01no273_f12.g1 CHROMAT_FILE:
MSMg01no273_f12.g1 PHD_FILE: MSMg01no273_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:42 2005
         (285 letters)



>mm_chr3_129033423_129034107
          Length = 685

 Score =  520 bits (269), Expect = e-152
 Identities = 281/285 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggaaggagcttacaccgtttaccaagaactgataaaagccactgggccacgtgaatat 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 aaggaaggagcttacaccgtttaccaagaactgataaaagccactgggtcacgtgaatat 260

                                                                       
Query: 61  cagatagaaagtaatagattaggtagaatatattagttttataattataattatttaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagatagaaagtaatagattaggtagaatatattagttttataattataattatttaatg 320

                                                                       
Query: 121 tatattttaaacacttctgcttgggacactgcagggaagaaaaacacttgtggctgcctg 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 tatattttaaacacttctgcttgggacactgcagggaagaaaaatacttgtggctgcctg 380

                                                                       
Query: 181 ttatgtggtaaaggcttggttagcattactactgcctgcttagtgatagttggcagctcc 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 ttatgtggtaaaggcttggttagcattactattgcctgcttagtgatagttggcagctcc 440

                                                        
Query: 241 aaggtttatccttatgccatcactgatccaggttttaagcattcc 285
           ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 aaggtttatccatatgccatcactgatccaggttttaagcattcc 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)