Query= MSMg01no273_g13.b1 MSMg01no273_g13.b1 CHROMAT_FILE:
MSMg01no273_g13.b1 PHD_FILE: MSMg01no273_g13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:47 2005
(318 letters)
>mm_chr3_29383139_29383855
Length = 717
Score = 571 bits (295), Expect = e-167
Identities = 304/307 (99%), Gaps = 1/307 (0%)
Strand = Plus / Minus
Query: 5 gaattcacaaaaagcaagaagagaaagaagggggtggggaaatcaatcaagcaagaaaag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gaattcacaaaaagcaagaagagaaagaagggggtggggaaatcaatcaagcaagaaaag 341
Query: 65 aggtgttttttttttcctgacaaaccacttgaaaatatgaaagtgagtcagtatttgagt 124
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 aggtg-tttttttttcctgacaaaccacttgaaaatatgaaagtgagtcagtatttgagt 282
Query: 125 acgggtctcttccactgggaacaagtgttatccttgcaatggcttccacaactcctttac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 acgggtctcttccactgggaacaagtgttatccttgcaatggcttccacaactcctttac 222
Query: 185 atgttacatctctctctttttgttttattctcttttattagatattttcttcatttacat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 atgttacatctctctctttttgttttattctcttttattagatattttcttcatttacat 162
Query: 245 ttcaaatgctattcccaaagccccttataccctccccctgccctgctccccaactctccc 304
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 161 ttcaaatgctattcccaaagccccttataccctccccctgccctgctctccaactccccc 102
Query: 305 cactcct 311
|||||||
Sbjct: 101 cactcct 95
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 717
Length adjustment: 9
Effective length of query: 309
Effective length of database: 708
Effective search space: 218772
Effective search space used: 218772
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no273_g13.g1 MSMg01no273_g13.g1 CHROMAT_FILE:
MSMg01no273_g13.g1 PHD_FILE: MSMg01no273_g13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:47 2005
(340 letters)
>mm_chr3_29244701_29245440
Length = 740
Score = 629 bits (325), Expect = 0.0
Identities = 336/340 (98%)
Strand = Plus / Plus
Query: 1 ggtgcacactcagcagttgtaagtgcagactgcagaagcatttgtgcccacactgtatca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggtgcacactcagcagttgtaagtgcagactgcagaagcatttgtgcccacactgtatca 260
Query: 61 tgggtacatttatacttagctcctggttctctaacaaccgtgagttatatttagcaactg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggtacatttatacttagctcctggttctctaacaaccgtgagttatatttagcaactg 320
Query: 121 tatttttgacatagatcaccaagttactctgatagtatacaaggtcatttactgtgcaag 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatctttgacatagatcaccaagttactctgatagtatacaaggtcatttactgtgcaag 380
Query: 181 gattcaagcccatggattcatactaggaagaatcatgaaatcatctgcccttcaaacgtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gattcaagcccatggattcatactaggaagaatcatgaaatcatctgcccttcaaacgtc 440
Query: 241 agttacctaattggtccataattatgaatcttaacattctgagcagtttttanaaattaa 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 agttacctaattggtccataattatgaatcttaacattctgagcagtttttaaaaattaa 500
Query: 301 agttgccttgaatttctctaaattatacttatttatttgg 340
||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 501 agttgccttgaatttctttaaattatacttaattatttgg 540
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space: 241961
Effective search space used: 241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
