BAC Information

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BAC

Clone NameMSMg01-273J10
Chromosome3 (Build37)
Map Location 101,303,347 - 101,303,634
singlet/doubletsinglet
Overlap genenone
Upstream geneOTTMUSG00000007026, Man1a2, Vtcn1, Trim45, Ttf2, Igsf2, Ptgfrn, LOC668578, LOC668583, LOC669017, Cd2, LOC100043490, Igsf3
Downstream geneLOC100043032, Atp1a1, LOC100043036, BC037703, Slc22a15, Nhlh2, LOC100043047, Casq2, Vangl1, EG433633, Ngfb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273J10.T7 (MSMg01no273_j10.b1)MSMg01-273J10.TJ (MSMg01no273_j10.g1)
ACCAG412548AG412549
length735738
length of high quality
(start - end)
288 (71 - 358)291 (69 - 359)
definitionCHROMAT_FILE: MSMg01no273_j10.b1 PHD_FILE: MSMg01no273_j10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:59 2005CHROMAT_FILE: MSMg01no273_j10.g1 PHD_FILE: MSMg01no273_j10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAATTC
TTCCCATATTGCCCAATACCAAATTACCAAAATACCAGTGGTTGGCAAAT
GTATTCTGAGAGATTACTCGACAGACCATAAGACGGCCACACGATTTTGT
TAACAAGACCCAGAAGGCACAGGGACGGCTGGCTATCTCACCTTTAGCCA
TAGACCACAGTCCTCTCCCCAGTCCTTCCTGGGTAGTAAGGGTGTTGATA
ATGCCCTGCCCCAGAACTGTCCCTTGCCCCTTGCCAGCTTTAGGGGGATG
AAGCAGGGGTCAACCAAGTATTCCAGGCCTTGAGCGGGTTTCTCTCCCTT
CTGAGTATTCTTTTCTCCCGCCCACCCCTCCATCTCTCAGTTAAGAACAA
TGGGTGCTATAGAGGAACACTGATAGGAGCAAGCAAGGTACACACACACA
CACACACACACACACTCACACTCACTCACACACACACACCCCGCTTTAAA
GAAATAAAACATTCTGCTTGTCAGTCAGTTCAGTCTGACACATTTTATTC
TCACTGTTTAAACAGGCCTCTGGACCAGACAGAGCCAGAGCATGGAATAG
TCCATCCACTGCCTGGGGCTGAATGCTGTCCCCCATGAATTGAGCTACCC
ATCACTGAACTTTTTCCCCCATCCTGAAGGGTGGCTTTTAAAAAATAAGA
ATTTATTCCTTACACTCACTCTTCCCCCCTCTTTT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATCACACCTTCCATTTTAGGGCTAGAATCCCC
AGCATCACTGCGACCATCTGCCATGAAAGATCATGAGATATGAACTCCAG
GTCCAAGAAGCCAGAGGGAAGACTGAATTTCCTTCCAGCCTTGCTACTGA
AAACATTCCCACGTCATTGTGACAGGAAGTGGAAGTCATTGAGTATACAA
TCAAAATGTGACTGCAAAAGTTTACAGAGGGCCCTGGAGAGATGGCTCAG
CGGTCAAGAGCAATGGCTGCTCTCCCAGAGGACCTGGCCCTGATTCCCAG
CACCCACAGGGGCTTCTCAACCACGCGCCCCCCAAGTAGTGCATGCCTTT
AATGCCAGCACTCAGGAGGCAGAGGAAAAAGAGATCTCTGTGAGTTTGAT
TTTAGCTTCATTTATATAGTGAGCACCAGGACAGCTAAGGCTAGACAGAG
TAGACAGAGAGACCATTATCTCCCACTCCCCACCCCCGCAAAAAAAAAAT
TAATACTAAACCCAAAATAAAAGAAAAGTTATAAGACCATTTTTAGTGAA
AGACTGAATAAATCTCAGTCCCAAATTAAAACCTTTTAAACTCTGTTTAA
AGAAAAAAAAAGTGCCTTTAGCAAACCTTTTGTTTTACCTTTCCCCTTTT
TACTTTTACGGGTATATTTTATGTCCGGGCGGGAATGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_j10.b1 MSMg01no273_j10.b1 CHROMAT_FILE:
MSMg01no273_j10.b1 PHD_FILE: MSMg01no273_j10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:59 2005
         (288 letters)



>mm_chr3_101303147_101303834
          Length = 688

 Score =  489 bits (253), Expect = e-143
 Identities = 280/289 (96%), Gaps = 2/289 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaattaccaaaataccagtggttggcaaatgtattctgagagattactcgacagaccata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 488 aaattaccaaaataccagtggttggcaaatgtattctgagagattactcgagagaccata 429

                                                                       
Query: 61  agacggccacacgattttgttaacaagacccagaaggcacagggacggctggctatctca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 agacggccacacgattttgttaacaagacccagaaggcacagggacggctggctatctca 369

                                                                       
Query: 121 cctttagccatagaccacagtcctctccccagtccttcctgggtagtaaggg-tgttgat 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 368 cctttagccatagaccacagtcctctccccagtccttcctgggtagtaagggatgttgat 309

                                                                       
Query: 180 aatgccctgccccagaactgtcccttgccccttgccagctttagggggatgaagcagggg 239
           | ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 308 actgccctg-cccagaactgtcccttgccccttgccagttttagggggatgaagcagggg 250

                                                            
Query: 240 tcaaccaagtattccaggccttgagcgggtttctctcccttctgagtat 288
           ||||||||||| |||||||||||||| || ||||||||||||| |||||
Sbjct: 249 tcaaccaagtactccaggccttgagcaggcttctctcccttcttagtat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)