XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
CTTTACATCCTCGAAGTTAAGGAGCTTGTGTTGTCTATAGCACTGGACAT
TTCCACCATTGTAAAAGAAAAATTTTCCAAAAGCATTGGGTATTTTTTCT
ACATCCTGAAATTAGGTTAACATAAGCATACTTATTTTGAGAACTGAGTC
TTGCACTTGAGTTACGAAATTTCAAATTATACTTGTTATATAGATCTTTA
ACAAGCAATATATACAGAGAATTTTTTTAGTTGCTGGACTTATTAGGAAG
TGGAGTTTAATATGCTTTTCATTTTATTATGAAATATGTTTTCAAATAAT
AAGACACCATCTTTTCATATTAAAATGGAAATGTGCTTGGAAATTTTTAT
ATACTTCAATATTTTCATTTCATAATGGTAATGTAAAAGAAATATTTTTT
TTCACTACTTTTAGTTAAGACAACTGAAACTATGAAGGAGCTGAAGGGTT
TGCAACCCCATAGGAAGAACAACAATATCAACCAACCAGAGGCCCGAGAG
CTCACAGGGACTAAACCACCAATCANAGAGTACACATGGAGAGACCCATG
GCTCCAGATGCATATGTAACAGAGGATTGCATTGTCTGGAATCAATAGGC
AGAAAGGCCCTTGGTCCTGTGAAGGCTCTATTTTATATAAAATATCCCAT
ANAATTAATAAATTATAAAAACAATAAAAGC

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTACACAAAACAGAGGAATGCAAGCACGGA
AGGACTGGCAGGAACCAACTGGGATAAAATTCAATGTTAACAACTGGGAT
CCAAAACAGGTCCACTTAAGGTCCACTTAATCCTAGAAGCCAGGGGCAAG
GGCTTCATGCACTTGCCATAGTTCCTACTCTAGTCTATTGTATAGTCCTC
CTTCCCCCTAGACTATTGTAAATACTTGTGTATGGGTATGACTCAGCTAT
CTATAGTTCTAAGTATCTACTCTGGTTCCTCTTTAGGTCACAAACTTCCT
TCTTCCTAGATAATGGTAAATTTCTTTTTTTTTCCATTTGTTATTAGGTA
TTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATACCCTC
CCAACCCCACTCCCTTACCCAACCACTCACCCTTTTTGGCACTGGAGTTC
CCCTGTACTGGGCCATATAAAGTTTGCGTGTCCAATGGGCCTCTCTTTCC
AGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAG
AGCTCCAGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGC
AGATCCCTTTAGCTCCTTGGCTACTTTCTCTAGCTCCTCCATTGGGAGCC
CTGTGATCCATCCATTAGCTGACTGTGAGCA

Query= MSMg01no273_n04.b1 MSMg01no273_n04.b1 CHROMAT_FILE:
MSMg01no273_n04.b1 PHD_FILE: MSMg01no273_n04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:16 2005
         (627 letters)



>mm_chr3_11602371_11603397
          Length = 1027

 Score = 1191 bits (616), Expect = 0.0
 Identities = 624/627 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttaaggagcttgtgttgtctatagcactggacatttccaccattgtaaaagaaaaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttaaggagcttgtgttgtctatagcactggacatttccaccattgtaaaagaaaaatt 260

                                                                       
Query: 61  ttccaaaagcattgggtattttttctacatcctgaaattaggttaacataagcatactta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttccaaaagcattgggtattttttctacatcctgaaattaggttaacataagcatactta 320

                                                                       
Query: 121 ttttgagaactgagtcttgcacttgagttacgaaatttcaaattatacttgttatataga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttgagaactgagtcttgcacttgagttacgaaatttcaaattatacttgttatataga 380

                                                                       
Query: 181 tctttaacaagcaatatatacagagaatttttttagttgctggacttattaggaagtgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctttaacaagcaatatatacagagaatttttttagttgctggacttattaggaagtgga 440

                                                                       
Query: 241 gtttaatatgcttttcattttattatgaaatatgttttcaaataataagacaccatcttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtttaatatgcttttcattttattatgaaatatgttttcaaataataagacaccatcttt 500

                                                                       
Query: 301 tcatattaaaatggaaatgtgcttggaaatttttatatacttcaatattttcatttcata 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 501 tcatattaaaatggaaatgtgcttggaaatttttatatacttcaatattttcatttcaaa 560

                                                                       
Query: 361 atggtaatgtaaaagaaatattttttttcactacttttagttaagacaactgaaactatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atggtaatgtaaaagaaatattttttttcactacttttagttaagacaactgaaactatg 620

                                                                       
Query: 421 aaggagctgaagggtttgcaaccccataggaagaacaacaatatcaaccaaccagaggcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaggagctgaagggtttgcaaccccataggaagaacaacaatatcaaccaaccagaggcc 680

                                                                       
Query: 481 cgagagctcacagggactaaaccaccaatcanagagtacacatggagagacccatggctc 540
           ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 681 cgagagctcccagggactaaaccaccaatcaaagagtacacatggagagacccatggctc 740

                                                                       
Query: 541 cagatgcatatgtaacagaggattgcattgtctggaatcaataggcagaaaggcccttgg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cagatgcatatgtaacagaggattgcattgtctggaatcaataggcagaaaggcccttgg 800

                                      
Query: 601 tcctgtgaaggctctattttatataaa 627
           |||||||||||||||||||||||||||
Sbjct: 801 tcctgtgaaggctctattttatataaa 827


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space:   627489
Effective search space used:   627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)