BAC Information

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BAC

Clone NameMSMg01-274I08
Chromosome3 (Build37)
Map Location 157,805,750 - 157,826,404
singlet/doubletdoublet
Overlap geneLrrc7
Upstream geneNegr1, LOC546818, Zranb2, Ptger3, LOC433686, LOC624684, Cth, Ankrd13c, Sfrs11, Lrrc40
Downstream geneLOC100041008, LOC668905
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274I08.T7 (MSMg01no274_i08.b1)MSMg01-274I08.TJ (MSMg01no274_i08.g1)
ACCAG413223AG413224
length736745
length of high quality
(start - end)		699 (38 - 736)671 (75 - 745)
definitionCHROMAT_FILE: MSMg01no274_i08.b1 PHD_FILE: MSMg01no274_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:04 2005CHROMAT_FILE: MSMg01no274_i08.g1 PHD_FILE: MSMg01no274_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(157,826,010 - 157,826,404)(157,805,750 - 157,806,420)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAT
AGGCCAATAGAAGACTATGAAATCATGAGAAGAAGGAAGAGATCTTAAGG
GAGGAGGAAAGAGAAAGCAACAGCACACGTGACAAGAAGTGAAAGGGAAC
ACTTAGGGAAGAAGAGTAAAGGAGAGGACCGAATTAGAACAAAGTCTAAT
AGCACCCAAATCTGAAGATGCTTTTTATGCTATTTTTTAATTAATTATTT
ATCTACATTCCAGATGTTGCCCCCTCCCACAATTCTTCTTCCCACTCGCC
CTCCCCTCTGCCTCTGAGAAGGTGCACCACTCTCTACCCAGGAATTCCCC
TTCTCTGAGGCCTCAAGTCTCTGCAGGATTAGACACATCCTCTCCACCTG
AAGCCAGACAAAGCAGTCTTCTGCTACATATATGCCAGAGGCCTCGGACC
AGCCTGTGTATGCTCTTTGGTTGGTGGCTTAGTCTCTGGGAGATCCCAGG
TGTCTGGGTTAGTTGAGATTGTTAGTCTTCCTATGGGGTTGCCACCCCCT
TCAGCTCCTTCAATTCCTCCCCTAACTCTTCCATAGAGGTCCCTAACCTC
AATCTAATGGTTAGCTATAAGTGTCTGCATCTGTCTCAGTCAGCTGCTAG
TAGGGCCTCTCAGAGGACAGCCATGATAAGCTCCTATCTGTAAGCACAAC
ATAGCATCAGTGATAGTTAGGCTTTGGTGTCCCTGC

ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTACTCAGCAAAGGAAACATTTAAATG
AGTGAAGAGACAGGCTAGAGAATGAGAAAAAAATTTTTCACCAGGTATAT
CTGATAGCATATCTAAAATACTCAAGATCTAAATAACAAGAAATCAACCA
TGTCAATGAAGAAACTAATGAAATGAACTGACCGTTCTCAGAATATGAAA
TGGCCAATAAACAGATGAGGCTATTCACCTTCTCCACTCTCCAAGGAAGT
GCAAATTAAAACTATATTGGTAATCCATCTAACTCGAGTCAGAATGACAA
CTATTAATACTAACAATATGGGCTGGAGAGATGGTTCAGTGGTTAAGAGC
ACCAGTTGCTTTTCCAGACGTCCTAAGTTCAATTTTCAGCAATACCCACC
CGTACCTTCCCTAAGCCCCCTCTCTTTCCTACAAGCCCATGGGCCCTACA
CAGTTTTGTTTTCATTTTCATGCCGCATATACATCCATGATTTCATGTGC
CTGAATAAAATTTAGAAACCAAAAATGAGAGGCTTACAACACCCTATAAT
GAGTTCTGATGCCCTCTTTCAGCATGCTTGTGTTCATGCAGATAGAGCAC
CCACACATAAACAAATAAATCTACAAAAAGAATAACAATATATGCCAATG
AGGATGTGGACAAAGGGATCCCATATATACCTTGGTGGGAATCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_i08.b1 MSMg01no274_i08.b1 CHROMAT_FILE:
MSMg01no274_i08.b1 PHD_FILE: MSMg01no274_i08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:04 2005
         (699 letters)



>mm_chr3_157826010_157827108
          Length = 1099

 Score =  756 bits (391), Expect = 0.0
 Identities = 394/395 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctataggccaatagaagactatgaaatcatgagaagaaggaagagatcttaaggg 64
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 395 gaattctataggccaatagaagactatgaaatcgtgagaagaaggaagagatcttaaggg 336

                                                                       
Query: 65  aggaggaaagagaaagcaacagcacacgtgacaagaagtgaaagggaacacttagggaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 aggaggaaagagaaagcaacagcacacgtgacaagaagtgaaagggaacacttagggaag 276

                                                                       
Query: 125 aagagtaaaggagaggaccgaattagaacaaagtctaatagcacccaaatctgaagatgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aagagtaaaggagaggaccgaattagaacaaagtctaatagcacccaaatctgaagatgc 216

                                                                       
Query: 185 tttttatgctattttttaattaattatttatctacattccagatgttgccccctcccaca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 tttttatgctattttttaattaattatttatctacattccagatgttgccccctcccaca 156

                                                                       
Query: 245 attcttcttcccactcgccctcccctctgcctctgagaaggtgcaccactctctacccag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 attcttcttcccactcgccctcccctctgcctctgagaaggtgcaccactctctacccag 96

                                                                       
Query: 305 gaattccccttctctgaggcctcaagtctctgcaggattagacacatcctctccacctga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  gaattccccttctctgaggcctcaagtctctgcaggattagacacatcctctccacctga 36

                                              
Query: 365 agccagacaaagcagtcttctgctacatatatgcc 399
           |||||||||||||||||||||||||||||||||||
Sbjct: 35  agccagacaaagcagtcttctgctacatatatgcc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 699
Length of database: 1099
Length adjustment: 10
Effective length of query: 689
Effective length of database: 1089
Effective search space:   750321
Effective search space used:   750321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no274_i08.g1 MSMg01no274_i08.g1 CHROMAT_FILE:
MSMg01no274_i08.g1 PHD_FILE: MSMg01no274_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:04 2005
         (671 letters)



>mm_chr3_157805550_157806620
          Length = 1071

 Score = 1251 bits (647), Expect = 0.0
 Identities = 665/671 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tactcagcaaaggaaacatttaaatgagtgaagagacaggctagagaatgagaaaaaaat 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 tactcagcaaaggaaacatttaaatgagtgaagagacaggctagagaatgagaaaaaatt 260

                                                                       
Query: 61  ttttcaccaggtatatctgatagcatatctaaaatactcaagatctaaataacaagaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttcaccaggtatatctgatagcatatctaaaatactcaagatctaaataacaagaaat 320

                                                                       
Query: 121 caaccatgtcaatgaagaaactaatgaaatgaactgaccgttctcagaatatgaaatggc 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaccatgtcaacgaagaaactaatgaaatgaactgaccgttctcagaatatgaaatggc 380

                                                                       
Query: 181 caataaacagatgaggctattcaccttctccactctccaaggaagtgcaaattaaaacta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caataaacagatgaggctattcaccttctccactctccaaggaagtgcaaattaaaacta 440

                                                                       
Query: 241 tattggtaatccatctaactcgagtcagaatgacaactattaatactaacaatatgggct 300
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 tattggtaatccatctaactcgagtcagaatgacaactattaagactaacaatatgggct 500

                                                                       
Query: 301 ggagagatggttcagtggttaagagcaccagttgcttttccagacgtcctaagttcaatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggagagatggttcagtggttaagagcaccagttgcttttccagacgtcctaagttcaatt 560

                                                                       
Query: 361 ttcagcaatacccacccgtaccttccctaagccccctctctttcctacaagcccatgggc 420
           ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 561 ttcagcaatacccacccgtaccttccccaagccccctctctttcccacaagcccatgggc 620

                                                                       
Query: 421 cctacacagttttgttttcattttcatgccgcatatacatccatgatttcatgtgcctga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cctacacagttttgttttcattttcatgccgcatatacatccatgatttcatgtgcctga 680

                                                                       
Query: 481 ataaaatttagaaaccaaaaatgagaggcttacaacaccctataatgagttctgatgccc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ataaaatttagaaaccaaaaatgagaggcttacaacaccctataatgagttctgatgccc 740

                                                                       
Query: 541 tctttcagcatgcttgtgttcatgcagatagagcacccacacataaacaaataaatctac 600
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 741 tctttcagcatgcttgtgttcatgcagatagagcacccatacataaacaaataaatctac 800

                                                                       
Query: 601 aaaaagaataacaatatatgccaatgaggatgtggacaaagggatcccatatataccttg 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aaaaagaataacaatatatgccaatgaggatgtggacaaagggatcccatatataccttg 860

                      
Query: 661 gtgggaatctg 671
           |||||||||||
Sbjct: 861 gtgggaatctg 871


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space:   701321
Effective search space used:   701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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