Query= MSMg01no275_e09.b1 MSMg01no275_e09.b1 CHROMAT_FILE:
MSMg01no275_e09.b1 PHD_FILE: MSMg01no275_e09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:59 2005
(689 letters)
>mm_chr3_82046749_82047837
Length = 1089
Score = 1201 bits (621), Expect = 0.0
Identities = 669/685 (97%)
Strand = Plus / Minus
Query: 5 gaattcagcacgttcctcccttctgccttcctgtgaacctgtgccccagtgggtatagtc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 889 gaattcagcacgttcctcccttctgccttcctgtgaacctgtgccccagtgggtatagtc 830
Query: 65 atttaattgcttgcatgataaacgagagtccctttcccctctcatctgctactcagagag 124
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 829 atttaattgcttggatgataaatgagagtccctttcccctctcatctgctactcagagag 770
Query: 125 acagttctctaacaaagcttttcaacacttaaatcttttgttgaatatgttcttaaataa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 acagttctctaacaaagcttttcaacacttaaatcttttgttgaatatgttcttaaataa 710
Query: 185 tggtttctctcttttaacctatccatttaaagttgataatccaactgatggatttgtgac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 709 tggtttctctcttttaacctatccatttaaagttgataatccaactgatggatttatgac 650
Query: 245 aagctaggcctctttttctggatgcctctgcaaaggctatgttttagaagttgattagaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 aagctaggcctctttttctggatgcctctgcaaaggctatgttttagaagttgattagaa 590
Query: 305 agacaatctaatgtccccttcaaacctcagtagatatatgcatgtgttacatttttggag 364
||||||||||| ||||||||||||||||||||||| || |||||||||||| ||||| ||
Sbjct: 589 agacaatctaacgtccccttcaaacctcagtagatgtaggcatgtgttacacttttgcag 530
Query: 365 tttctctatgttgatgctttgttgataataaatgcaagacactgtgccccattggaaagc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 tttctctatgttgatgctttgttgataataaatgcaagacactgtgccccattggaaagc 470
Query: 425 agaaagaccagcccttacatcctcagggattgtttgctttaacatgttctaggtatttaa 484
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 469 agaaagaccagcccttacatactcagggattgtttgctttaacatgttctaggtatttaa 410
Query: 485 tgtactttacatgtattataatttcacaggtaccagaatgggaattaaagtctttctcct 544
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 409 tgtactttacatgtattataatttcacaggtaccaggatgggaattaaagtctttctcct 350
Query: 545 ctgcctcaggaaaagccatctctgttctctgcatctgagaggggtcacattcttccctat 604
||||| |||||||||||||||||||||||||||||||| | |||||||||| ||||||||
Sbjct: 349 ctgccccaggaaaagccatctctgttctctgcatctgaaatgggtcacatttttccctat 290
Query: 605 gggaaatgctatcttacaaagtaacccaggctactctctgaagctctgtccccatccagt 664
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 gggaaatgctatttttcaaagtaacccaggctactctctgaagctctgtccccatccagt 230
Query: 665 aggctgactgtagcatcctcacgaa 689
|||||||||||||||||||||||||
Sbjct: 229 aggctgactgtagcatcctcacgaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space: 732641
Effective search space used: 732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no275_e09.g1 MSMg01no275_e09.g1 CHROMAT_FILE:
MSMg01no275_e09.g1 PHD_FILE: MSMg01no275_e09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:59 2005
(288 letters)
>mm_chr3_81907864_81908550
Length = 687
Score = 460 bits (238), Expect = e-134
Identities = 271/286 (94%), Gaps = 8/286 (2%)
Strand = Plus / Plus
Query: 1 tttaaaatgtttgaaaaccagactcttctcatttatcataagctatttccagctattttc 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttaaaatgtttgaaaaccagacccttctcatttatcataagctatttccagctattttc 260
Query: 61 atgcagaattggaaatgaggagacagtgaataggaaggctggggaaccgtgattggtggt 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 atgcagaattggaaatgaggagacagtggataggaaggctggggaaccgtgattggtggt 320
Query: 121 gagatctgactccatctgcagccaggtagccaagcaactctgtgaacaggctccttctgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 gagatctgactccatctgcagccaggtagccaagcaactctgtgaacaggctctttctgg 380
Query: 181 ggggcggggggcggggggtggggggagatacaacataggagtccttaatagaaccagtgc 240
||| |||||| ||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 381 ggg-cgggggacgggggg-------agatacagcataggagtccttaatagaaccagtgc 432
Query: 241 aactagaatcagaggatgacaagtacttctttggcacacacgttat 286
|||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 433 aactagaaacaggggatgacaagtacttctttggcacacacgttat 478
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 687
Length adjustment: 9
Effective length of query: 279
Effective length of database: 678
Effective search space: 189162
Effective search space used: 189162
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
