BAC Information

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BAC

Clone NameMSMg01-275G13
Chromosome3 (Build37)
Map Location 34,176,378 - 34,176,621
singlet/doubletsinglet
Overlap geneEG665636
Upstream geneEG545512, LOC100041058, Ttc14, Ccdc39, LOC100040232, LOC100041072, Fxr1h, Dnajc19, LOC435727
Downstream geneEG622074, Sox2, LOC100041108
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275G13.T7 (MSMg01no275_g13.b1)MSMg01-275G13.TJ (MSMg01no275_g13.g1)
ACCAG413870AG413871
length743740
length of high quality
(start - end)
244 (374 - 617)219 (431 - 649)
definitionCHROMAT_FILE: MSMg01no275_g13.b1 PHD_FILE: MSMg01no275_g13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:08 2005CHROMAT_FILE: MSMg01no275_g13.g1 PHD_FILE: MSMg01no275_g13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCCAAAGAAGCGCGGAATT
CTTTAAAATGCCCAAAACATGGTCTTAGTTTTAGAAATACTGTTTATTTG
GAGATTTCAACATTTTGTCCCAAATTTTCAGATAATATGAAAAAGCAAAA
GCATATATGTGTGTGAGTGCTTGTATATATTACATATATATGTGTGTATA
TACATATAGGAGATCACAAGAGGGTAATATTGAGTGACAGGGATGGACAG
ATTTCAGGGGAAAGGACACTTGGGCCATGAAAGAAGGTACAAAGCTATTA
TTTTCTTCTTTCAATTTTGTCNGTTTTTCTCTTTGCATTGGGCAAGTCTA
TAGAAATGTAGTTGATACCGAATGTATAAATGACCCTAATTGAAACCCTA
TGGCTTCAGAATGGTCATTCTAACTGTATAGAAATTCAATGCGACTCATA
GAGTTTGGGTCTAGGAAAGAAATGGTGCTCCTGATGCGGCATCCTGTGCA
CATGTCCAGAAGAAGCTTCCATTTACAAAAGGAAGATGCATGGCGAATCA
TCCTAAGACTCTAGTTTGCTTATCACAGTGTTTGCGGTGCATACACGTGA
ACATGCATGACAGTAACGCTTACCGTGTTGCTAAGAGACGGATACTCACC
TGTTATCTTATGTATGAGCGACCAGGATGCCTATGCTGTAATCTCGCTTC
AGTACCTTTGCTGACTGTGGTTGCATTTTCTGGTTCAGCCGTG
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCCCTTAAAGAGATAGCCTCTCTGGCTATCTATC
CCTTGCTTCTTTAACCCGAGCGGGGATGAGAGCCCTGGGATGTATGCTTG
TTATAGTGTGTGTGTGTGCTTTGTGTTTGGCACATGTGTTAGGTGCAGAG
TGTGCGGCCCACACTTTCGCCATGGTAGCATAGGCTTTTGCTGCTGTGGA
GGCAGGACAATCTCCTCAGATTCGGTTTGCCGCTCTAAAAGAAATTATGC
TGCGTTATGCCTTGTTTTGCGAGGCTAAGCACTGCACAGAGGATAGCTTG
CTGTTGTCTTCCTGCCCCCCCGCCTGTCTGATTGCATGAAGGTTCAGTGT
CCTAGTTCCCTTCCCCCAGAAAAAACAACACGGGAGCTGGCCAAGACCTC
TCTGGGTGATGAGCCTAAGGGATGGTTTTGTGTAGGGCCCCTATGCTTGC
ACACTGGGGATCAGACCTCTACCTTCACCCATGAGGCTTGCTTGCAGCAA
TTAAGATCTGGCCATAGATTAATTAACATCCTGGCCTTTTGATGCACCTG
CCGCAAGCAAAACACAATCTCCCCAGGTGTGGCTTGGCATGATTGAGAGG
TAGTCAGTGATAAGACTCCCTGGGCATGTCACCAACCTAAGACAGGGATC
AAACCAATGCTGTTTGTCACCCAAGGACGGGTATGGGGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_g13.b1 MSMg01no275_g13.b1 CHROMAT_FILE:
MSMg01no275_g13.b1 PHD_FILE: MSMg01no275_g13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:08 2005
         (244 letters)



>mm_chr3_34176178_34176821
          Length = 644

 Score =  449 bits (232), Expect = e-131
 Identities = 241/244 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtataaatgaccctaattgaaaccctatggcttcagaatggtcattctaactgtatagaa 60
           ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 gtataaatgaccctaattgaagccccatggcttcagaatggtcattctaactgtatagaa 260

                                                                       
Query: 61  attcaatgcgactcatagagtttgggtctaggaaagaaatggtgctcctgatgcggcatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attcaatgcgactcatagagtttgggtctaggaaagaaatggtgctcctgatgcggcatc 320

                                                                       
Query: 121 ctgtgcacatgtccagaagaagcttccatttacaaaaggaagatgcatggcgaatcatcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtgcacatgtccagaagaagcttccatttacaaaaggaagatgcatggcgaatcatcc 380

                                                                       
Query: 181 taagactctagtttgcttatcacagtgtttgcggtgcatacacgtgaacatgcatgacag 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 taagactctagtttgcttatcacagtgtttgtggtgcatacacgtgaacatgcatgacag 440

               
Query: 241 taac 244
           ||||
Sbjct: 441 taac 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)