BAC Information

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BAC

Clone NameMSMg01-275P04
Chromosome3 (Build37)
Map Location 85,719,149 - 85,837,381
singlet/doubletdoublet
Overlap geneLOC100042265, Gm1019
Upstream geneFbxw7, Dear1, LOC100042237, LOC100042125, Pet112l, 9930021J17Rik, Glt28d2
Downstream geneSh3d19, Rps3a, LOC634201, Lrba, Mab21l2, EG667024, LOC100042319, Dclk2, EG625055, Cd1d2, Cd1d1, LOC667897
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275P04.T7 (MSMg01no275_p04.b1)MSMg01-275P04.TJ (MSMg01no275_p04.g1)
ACCAG414263AG414264
length763761
length of high quality
(start - end)
289 (68 - 356)285 (72 - 356)
definitionCHROMAT_FILE: MSMg01no275_p04.b1 PHD_FILE: MSMg01no275_p04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:47 2005CHROMAT_FILE: MSMg01no275_p04.g1 PHD_FILE: MSMg01no275_p04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,837,093 - 85,837,381)(85,719,149 - 85,719,433)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACAATTGTTACCTAGACCAGCAGCCAGCAAGCCCCAGTGATCATCACAGC
TCTGCATCCCCCCTCTCGCGTACAGACATGCACACGAGCACACAGGCTTG
CTGCATGGGAATTAGGATCTAATCGCAGGCCCGCACCGTTGTAAAGCAAG
TGCTCTTAATGACCGAGTCATATCTCCAATCCCCTTGTTTTGCTTTTTTG
AGACAGGGTTTTGCTAAGTAGCTCAGCCTGGCCTCTGTAATCCCGCTTCA
GCCTCCCAAATGCTGCGATTACAGGTGCAAGCTCACACACCCAGAAGCTG
TTCTTGTTTTTGTATGTGCCCCCACCCCCGCCCAGGCTGCTCTCAAACTC
CTCAGCTCAAACAATCCTCCTGCCTCAGATTCACAAGTTGTTGGGACGAT
TAGCACATACAATTATGCCAGGATTATGTCTACCATCTTTAGAAGCGGCT
TGAGAGCCACTTTCTCCACAAAGCAGACACTAGCGCTTCTTTCTCTTCTT
CAACAGTCTTCTATTCGTTTCCTCTTGCTGTGTTCTTAATGGAAAACAAC
AAAAATGTGTTAACTCATGGTGCAGAGGCAAGATGTCAAAGGTACATCTC
CTTGGGATAAAACTAAGGTTTCCAAAAGGCTTTATATTATTTCTTCTGGA
ATAACGGGGGTTGGTGGGTGTATTTATGCATTTCCTTGCTTTTTTTCTGT
CTCTTGAAGTATN
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGTTGGTATAAAGTGCTTGCCTAACACGT
ACAAAGATTTGGTTTAGTCCCAGCACTTGTCAACTGGGTATGTGACACAT
AACCTATAATCCCAGCACCTGGGAGGTAGAGGCTGCAGGACTAGAATCAA
TCAGCTCATGGCACGTTCAAGGCTAATGTGACCTACATGTCACTCAGTCT
CAAAATATACGCTTTCCTTTAGAATCTTTATTTTGAATACTGTCTTAATT
TGGTTCTATATGTATGCTTCTACCTAGACATTAATGTCTTGTCTCTATAT
CCAACATTCNGTAANGTCTCCAGNTCAANCACCGGCTCTCACTAGATGAT
CTGGACACCATTGTCCACTTGAAAAAAATAGAAAAAATAGTTATAACTTT
CTCGTTACACATTATAATCTTTGAGACACGGCTATCTTTCCTTTCTAGAA
ACAGCTAGCTAGCTTGTCTAGTGAAATGTAACATAAAAAAATGCCAAGCT
AGGCACTCGGGTGGCGGCCAGAAACCGGCAGGACTGGAAGGGACCCCGCG
TCTCGGAAGACTCTTCAAGAAATCACAATGTCAACCAACACAGACCTTTC
TCTCTCTTCATACGATGAAGGTCAGGGTTCTAAGTTTATTCGGAAAGCTA
AGGAGACACCGTTTGTCCCCATTGGAATGGCGGGCTTTGCAGCGATTGTT
GCCTATGGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_p04.b1 MSMg01no275_p04.b1 CHROMAT_FILE:
MSMg01no275_p04.b1 PHD_FILE: MSMg01no275_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:47 2005
         (289 letters)



>mm_chr3_85837055_85837743
          Length = 689

 Score =  543 bits (281), Expect = e-159
 Identities = 287/289 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagcagccagcaagccccagtgatcatcacagctctgcatcccccctctcgcgtacagac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 327 cagcagccagcaagccccagtgatcatcacagctctgcatcccccctctcgggtacagac 268

                                                                       
Query: 61  atgcacacgagcacacaggcttgctgcatgggaattaggatctaatcgcaggcccgcacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 atgcacacgagcacacaggcttgctgcatgggaattaggatctaatcgcaggcccgcacc 208

                                                                       
Query: 121 gttgtaaagcaagtgctcttaatgaccgagtcatatctccaatccccttgttttgctttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gttgtaaagcaagtgctcttaatgaccgagtcatatctccaatccccttgttttgctttt 148

                                                                       
Query: 181 ttgagacagggttttgctaagtagctcagcctggcctctgtaatcccgcttcagcctccc 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 147 ttgagacagggttttgctaagtagctcagcctggcctctgtaatcctgcttcagcctccc 88

                                                            
Query: 241 aaatgctgcgattacaggtgcaagctcacacacccagaagctgttcttg 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87  aaatgctgcgattacaggtgcaagctcacacacccagaagctgttcttg 39


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no275_p04.g1 MSMg01no275_p04.g1 CHROMAT_FILE:
MSMg01no275_p04.g1 PHD_FILE: MSMg01no275_p04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:47 2005
         (285 letters)



>mm_chr3_85718949_85719633
          Length = 685

 Score =  536 bits (277), Expect = e-157
 Identities = 283/285 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttggtataaagtgcttgcctaacacgtacaaagatttggtttagtcccagcacttgtc 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 agttggtataaagtgcttgcctaacacgtacaaagatttggttcagtcccagcacttgtc 260

                                                                       
Query: 61  aactgggtatgtgacacataacctataatcccagcacctgggaggtagaggctgcaggac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aactgggtatgtgacacataacctataatcccagcacctgggaggtagaggctgcaggac 320

                                                                       
Query: 121 tagaatcaatcagctcatggcacgttcaaggctaatgtgacctacatgtcactcagtctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagaatcaatcagctcatggcacgttcaaggctaatgtgacctacatgtcactcagtctc 380

                                                                       
Query: 181 aaaatatacgctttcctttagaatctttattttgaatactgtcttaatttggttctatat 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaatatacgttttcctttagaatctttattttgaatactgtcttaatttggttctatat 440

                                                        
Query: 241 gtatgcttctacctagacattaatgtcttgtctctatatccaaca 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtatgcttctacctagacattaatgtcttgtctctatatccaaca 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)