TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAAAAGTATCTTTGTGCTACATGTCTCCATAAAATAATGTTATGAA
ATAAATTGTTGGCAATGTGCATTTAAATAGTGCATTCATTGTAAAGGACA
CATTAAATATCTGTGGTAATAATTGCGTTTTGTGTATAGCCATTCAGGAA
AGAGAAGCAGTATGCTATAAAATTAGCTGATGTTATCTCCATTGCATTGC
GAAGTTGTCCATTCAGTTTAACTAATTGCCTCCTCTTTATTTTCCAATAA
AGAATGAAAAAATGGAATTTAAAAGTTTATACAGATCACAATACTTCATA
AATTTTGTGAAAATTTGGCAAATTAACTACATCTCTACAAAGAATTCTTA
CTAGGTCTAGGTTAAAAGAAATAACAGCAACAACAAAATCTAGACAATAA
TTTGCAATGGATTAGTTTTAATGAGAAAAATATAAACAACTTATTTATTG
TTTAATGAAGAAAAATAATTGACCTTGATAAAGTAATTAAGAATATTGAT
GATAAATCTATGTAATAAATTTGAATGTGAATATCAATCTACAGGTGAAA
ATAGTACGAGCCTTTTGCCATACGGTTATAATTAGGATGCTCATTCTATT
TTCAACTGCATCATGAAACTAAATCACACCGAAAGAAGCTGTTTTCATAT
ATTATAAGGATTAATAAGTCAAAATACTATTTGGTATTATAACATTG

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTGCTGAAGCCATCAGGCCCTGT
TGTGAGGTTTTAAATGACTTCTCTCTCTCTCTTTTTTAAGGGATATAAGA
CTTTTTAGATAGTTCACCTGCTCTTGATTTAACTTTGGCATGTAGTATCT
GTCTAGAAAGTCATCCATTTCATCTAGATTTTCCAGTTCTGTTGAGCACA
GGCTTTTGTAGTAGGATCTGATGACTTTTTGTATTTCCTCAGTTTCTCTT
GTTATGTTTCCTTTTTCCTTGCTGATTTTGCTAATTTGGATACTGTCTCT
GGTCTCTTTGGTTATTTTGGGTCACCCCCTCCACTATCTTCTTGATTCCC
TCAAAGAACCAACTTTGGTTTTGTTGATTCCATGTATTGTTCTCTTTGTT
TCTATTTAGTTGATATTGGCCCCAAGTTTGACTATTTCTTACTATCTATT
CCTCTTGGGTGTGTTTGCTTCCTTTTGTTCTAGGGCTTTCAGGTGTGCTG
TTAAGATATTAGTGTAGGATTTTTACAATTTATTTACGAGGGTACTTAGT
GCTATGAATGTTCCTCTTAGCACTGCTTTCATTGTGTCCCATAGGTTTGG
GTATGCTGTGTGTCATCATTTTCATCAAATTTCAGGAAGTCTTTTAACTT
CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTN

Query= MSMg01no276_l12.b1 MSMg01no276_l12.b1 CHROMAT_FILE:
MSMg01no276_l12.b1 PHD_FILE: MSMg01no276_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:42 2005
         (703 letters)



>mm_chr3_48104020_48105122
          Length = 1103

 Score = 1336 bits (691), Expect = 0.0
 Identities = 697/699 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaaaagtatctttgtgctacatgtctccataaaataatgttatgaaataaattg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903 gaattcaaaaagtatctttgtgctacatgtctccataaaataatgttatgaaataaattg 844

                                                                       
Query: 65  ttggcaatgtgcatttaaatagtgcattcattgtaaaggacacattaaatatctgtggta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 ttggcaatgtgcatttaaatagtgcattcattgtaaaggacacattaaatatctgtggta 784

                                                                       
Query: 125 ataattgcgttttgtgtatagccattcaggaaagagaagcagtatgctataaaattagct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 ataattgcgttttgtgtatagccattcaggaaagagaagcagtatgctataaaattagct 724

                                                                       
Query: 185 gatgttatctccattgcattgcgaagttgtccattcagtttaactaattgcctcctcttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 gatgttatctccattgcattgcgaagttgtccattcagtttaactaattgcctcctcttt 664

                                                                       
Query: 245 attttccaataaagaatgaaaaaatggaatttaaaagtttatacagatcacaatacttca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 attttccaataaagaatgaaaaaatggaatttaaaagtttatacagatcacaatacttca 604

                                                                       
Query: 305 taaattttgtgaaaatttggcaaattaactacatctctacaaagaattcttactaggtct 364
           |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 603 taaattttgtgaaaatttggcaaattaattaaatctctacaaagaattcttactaggtct 544

                                                                       
Query: 365 aggttaaaagaaataacagcaacaacaaaatctagacaataatttgcaatggattagttt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 aggttaaaagaaataacagcaacaacaaaatctagacaataatttgcaatggattagttt 484

                                                                       
Query: 425 taatgagaaaaatataaacaacttatttattgtttaatgaagaaaaataattgaccttga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 taatgagaaaaatataaacaacttatttattgtttaatgaagaaaaataattgaccttga 424

                                                                       
Query: 485 taaagtaattaagaatattgatgataaatctatgtaataaatttgaatgtgaatatcaat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 taaagtaattaagaatattgatgataaatctatgtaataaatttgaatgtgaatatcaat 364

                                                                       
Query: 545 ctacaggtgaaaatagtacgagccttttgccatacggttataattaggatgctcattcta 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ctacaggtgaaaatagtacgagccttttgccatacggttataattaggatgctcattcta 304

                                                                       
Query: 605 ttttcaactgcatcatgaaactaaatcacaccgaaagaagctgttttcatatattataag 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ttttcaactgcatcatgaaactaaatcacaccgaaagaagctgttttcatatattataag 244

                                                  
Query: 665 gattaataagtcaaaatactatttggtattataacattg 703
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 243 gattaataagtcaaaatactatttggtattataacattg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 703
Length of database: 1103
Length adjustment: 10
Effective length of query: 693
Effective length of database: 1093
Effective search space:   757449
Effective search space used:   757449
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)