BAC Information

Click to search

BAC

Clone NameMSMg01-277C08
Chromosome3 (Build37)
Map Location 76,106,657 - 76,106,955
singlet/doubletsinglet
Overlap geneFstl5
Upstream geneWdr49, Pdcd10, Serpini1, Golph4
Downstream geneLOC100041625, LOC100041635
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277C08.T7 (MSMg01no277_c08.b1)MSMg01-277C08.TJ (MSMg01no277_c08.g1)
ACCAG415129AG415130
length710731
length of high quality
(start - end)
331 (378 - 708)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no277_c08.b1 PHD_FILE: MSMg01no277_c08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:14 2005CHROMAT_FILE: MSMg01no277_c08.g1 PHD_FILE: MSMg01no277_c08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTAACATGTACGCCACCATCATCCCTAAACTCAAGGAATTCATTGCT
ATCTTTCTGGGAAATATTTATCCATTATTCCATCCTCAATTTTATAATAA
AAATCCTATTTTTACTATACAGAATTGAGACTAAGACTGGGGGAATAGCT
GCTGAATCACTCATCTCTGCCTGTGGCTCTAGGTTACTTTCATTTCCACC
TAGAGCGAGTGACTGTAACACACATTTCTCTTGAATTCATGAACGGCCTT
CACTTGAATATCATTGGTATCATACAATTTCTGGATATCAAGTGGGATCT
TACTAGATCTTGTCAGGTCACTACATACAGGTTTAATCAAGGGAGGAAGA
AAAAAAGGAATAGTAAATAGATAAAGAAAATAGTAAATACTAAGAATAAT
TGTAGAAATGATATCACAAGGTGCTTGTGCCAAAGAAGCAGGCCTTGGGG
CCTTTCAGTACTCATACTGGGGCCCACAAGAGGCCATTGCCTTGCGCTCT
ATCAGGTTTTTCTTTCTTGTCATTGGGGTCACAGGCATCTTGACCTTAAT
GTGAGGTGTCTCTAACAATACATAGTATGTTCTCACTGATAACTGGATAT
TAGTCAAAAAGTTCTAAATACTTAAGATACAACTCACAGACTATATTAAG
CTTACCATGA
TCAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTCTTAAAAATTTTGACTTTGGT
GAATTATAAAAATTTAAGAAAAACTGCAGATGTTATAAATCCCTATTTTC
TCTAAATATACATATGCAAATACTACCATACATATATTTTTATCCTGAGC
TAACACCCCTTTAGGAAGGAGTATTGAATACATAAACTTAATTATGCTCA
TTTTTAAACATTTGAACCTACTATAAGGTAGTTATTTTTAATATATGTTA
TATATACACAAATGTATATATATATATATATTTGTGTTTATGTACATGGA
TATGTATATATATTGATGNTTTTCCCCCCCCCCCGCCAGTGTTCTAGTGA
ATATAAACAAAATAAAGGCAACCCATTACAAAAATAATGAGAATCTGTTT
GCTGGGTCTGTGAAAGTTGACCCTAAGTTTTTAGGTGAATAGCTGGAAAT
ATTATTTACTGAGCAGATTCCCTTTGTACCTAAATTACAAGTACCTTGAA
ATGTAAGATTTACAGTCATTACTACAGTACAGAGACCTTATTTAATCAGT
CATTAGATTTACTAGATACTCATGAATATATAAGCTTTTCATGAGTCCAG
GAACTATATGCATTCTGAACAGAGATGGAAAATGTTGAATTTAAAAGCAA
AAAGCATCCCTGTCTCAGAAGCTTGTTTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_c08.g1 MSMg01no277_c08.g1 CHROMAT_FILE:
MSMg01no277_c08.g1 PHD_FILE: MSMg01no277_c08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:14 2005
         (287 letters)



>mm_chr3_76106542_76107228
          Length = 687

 Score =  513 bits (265), Expect = e-150
 Identities = 285/299 (95%), Gaps = 12/299 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcttaaaaattttgactttggtgaattataaaaatttaagaaaaactgcagatgttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 414 attcttaaaaattttgactttggtgaattataaaaatttaagaaaaaatgcagatgttat 355

                                                                       
Query: 61  aaatccctattttctctaaatatacatatgcaaatactaccatacatatatttttatcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 aaatccctattttctctaaatatacatatgcaaatactaccatacatatatttttatcct 295

                                                                       
Query: 121 gagctaacacccctttaggaaggagtattgaatacataaacttaattatgctcattttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 gagctaacacccctttaggaaggagtattgaatacataaacttaattatgctcattttta 235

                                                                       
Query: 181 aacatttgaacctactataaggtagttatttttaatatatgttatatatacacaaatgta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 aacatttgaacctactataaggtagttatttttaatatatgttatatatacacaaatgta 175

                                                                      
Query: 241 t------------atatatatatatatttgtgtttatgtacatggatatgtatatatat 287
           |            |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 174 tgtatatatatatatatatatatatatttgtgtttatgtacatggatgtgtatatatat 116


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)