BAC Information

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BAC

Clone NameMSMg01-277D14
Chromosome3 (Build37)
Map Location 34,298,054 - 34,408,093
singlet/doubletdoublet
Overlap geneEG665636
Upstream geneEG545512, LOC100041058, Ttc14, Ccdc39, LOC100040232, LOC100041072, Fxr1h, Dnajc19, LOC435727
Downstream geneEG622074, Sox2, LOC100041108
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277D14.T7 (MSMg01no277_d14.b1)MSMg01-277D14.TJ (MSMg01no277_d14.g1)
ACCAG415186AG415187
length740750
length of high quality
(start - end)
310 (40 - 349)674 (77 - 750)
definitionCHROMAT_FILE: MSMg01no277_d14.b1 PHD_FILE: MSMg01no277_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:19 2005CHROMAT_FILE: MSMg01no277_d14.g1 PHD_FILE: MSMg01no277_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,298,054 - 34,298,366)(34,407,509 - 34,408,093)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
ATGCAATGTATTTTTTATCATATTCATCTCCAACTCCTCCCTTTGAGTTC
TCCCAGACTCACCCCACCTCCCTACACCTCTAACTTCTTGGGATTGTTGC
TTTTCAATAACTTGTTGATTCTAACGTGTTCTGTCTATATTCTCTTTAGT
GTTGAACCACATGGTTTATCTACCATGAGCCTTATCATTAAAAAATAGAA
GGGGACTCTCTTTTGTCAGAAGTCAGTAGCTCCACAGTTAGAGATTTCTT
CCTCTTCTACACTGGAGTGTTGACTGGGTTGATTTTGTGCTATGGGTTCA
TGTATTATAAAGGGCCTGACATATCCAGAAGACAGCATTTTGTTCTGATC
CTCCTCACCTCTGGCTCTTACCAACCCTCCCTCTTCCAAGATGATCCCCT
GAGCCTTGGGGGCGGGCAATATAGATGTCCCATTCGTAGCTGAACACTCC
CCAGTCTCAGCACCTTAACCAGTTGTGAGTTTCTGTGTTACCAACCATGT
GCTGTGTATAGAGACCTGCTTGCTGAAGCATGAAAGCTGCAGTAATCTGG
GTGCAGGACCATCTGTCTGTGCCCGGGGTCTTCTGTGATGGCAGAGGACA
GAGACTTTCTGAGTGCCTGGACCCTGACCTGGAGTCACATCTGGTTCTCA
TCTTGCAACTTTCGCTTCCTCTGTAACCCCTACAACATAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTATGACAGACAACAGTCAAGCAA
CTTTGTAATGTGGAGTCTGAACCCGGCTTGTTTTTCCGCTCATGATAACT
AGCTGTGCATGTAATACTCCTCAAATAAGCAAGAATAGCCCAGAGCCCTC
AGGGACTGAGAATCTGTCAGGCCTGGGGACAATGACTCAGGAGAAAAGAT
AAAGGGGGTGTGAGATGGCTCAGCTGGCAAGGGCCTAAGTTCGATACCCA
CATGGTGGAAGTAGGGAGTTGACTTCCGCAGATTATCCTCTGACCTCCAC
ATACTCACTGTGTTTTGGGTGACCTACCTGCCACAAATTAATCAATAAAA
ATGTAATGAAATTTTCTAAGATGAAAGACAAAAAACTTGAGCCCTGCTTG
GTGCCAGGCAAGGCCTTGACTCAGAGTCACATTCGCTGAGCCCTTTTGAC
TTGCAAACTGGTTAATGTTGGATGCAATTATTTAAACAAAGGCATAATTT
TGGTCTCCATCCAGTGAGAGAAACCTCTTGAGGTTCCGAATACCAGATCT
CCTACTGGCTTCCGGCATGTCAGAGTACCCAGGGAGGTGCAAATTCTCAG
TCGTCCTTGGAGAGCATCTAGGTTGACCACCACATCCCTTTCCACAAGGA
AATCCTTTGTCACTTCCTGCCTTTCGGCTAAAATCAAGTGTAAGAAATAC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_d14.b1 MSMg01no277_d14.b1 CHROMAT_FILE:
MSMg01no277_d14.b1 PHD_FILE: MSMg01no277_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:19 2005
         (310 letters)



>mm_chr3_34297857_34298566
          Length = 710

 Score =  536 bits (277), Expect = e-157
 Identities = 301/313 (96%), Gaps = 7/313 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatgcaatgtattttttatcatattcatctccaactcctccctttgagttctcc 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 gaattccatgcaatgcattttttatcatattcatctccaactcctccctttgagttctcc 257

                                                                       
Query: 65  cagactcaccccacctccctacacctctaacttcttgggattgtt-------gcttttca 117
           |||||||||||||||||||||||||||||||||||||||||||||       ||||||||
Sbjct: 258 cagactcaccccacctccctacacctctaacttcttgggattgtttgttgttgcttttca 317

                                                                       
Query: 118 ataacttgttgattctaacgtgttctgtctatattctctttagtgttgaaccacatggtt 177
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 318 ataacttgttgattctaacgtgttctgtctatatactctttagtgttgaaccacatggtt 377

                                                                       
Query: 178 tatctaccatgagccttatcattaaaaaatagaaggggactctcttttgtcagaagtcag 237
           |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 378 tatctaccgtgagccttatcattaaaaaataggaggggactctcttttgtcagaagtcag 437

                                                                       
Query: 238 tagctccacagttagagatttcttcctcttctacactggagtgttgactgggttgatttt 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tagctccacagttagagatttcttcctcttctacactggagtgttgactgggttgatttt 497

                        
Query: 298 gtgctatgggttc 310
           ||||| |||||||
Sbjct: 498 gtgctgtgggttc 510


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no277_d14.g1 MSMg01no277_d14.g1 CHROMAT_FILE:
MSMg01no277_d14.g1 PHD_FILE: MSMg01no277_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:19 2005
         (674 letters)



>mm_chr3_34407020_34408093
          Length = 1074

 Score = 1069 bits (553), Expect = 0.0
 Identities = 577/585 (98%)
 Strand = Plus / Minus

                                                                        
Query: 90   actcctcaaataagcaagaatagcccagagccctcagggactgagaatctgtcaggcctg 149
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1074 actcctcaaataagcaagaatagcccagagccctcagggactgagaatctgtcaggcctg 1015

                                                                        
Query: 150  gggacaatgactcaggagaaaagataaagggggtgtgagatggctcagctggcaagggcc 209
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1014 gggacaatgactcaggagaaaagataaagggggtgtgagatggctcagctggcaagggcc 955

                                                                        
Query: 210  taagttcgatacccacatggtggaagtagggagttgacttccgcagattatcctctgacc 269
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 954  taagttcgatacccacatggtagaagtagggagttgacttccgcagattatcctctgacc 895

                                                                        
Query: 270  tccacatactcactgtgttttgggtgacctacctgccacaaattaatcaataaaaatgta 329
            |||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||
Sbjct: 894  tccacatactcactgtggcatgggtgacctacctgccacaaattaatcaataaaaatgta 835

                                                                        
Query: 330  atgaaattttctaagatgaaagacaaaaaacttgagccctgcttggtgccaggcaaggcc 389
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 834  atgaaattttctaagatgaaagacgaaaaacttgagccctgcttggtgccaggcaaggcc 775

                                                                        
Query: 390  ttgactcagagtcacattcgctgagcccttttgacttgcaaactggttaatgttggatgc 449
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774  ttgactcagagtcacattcgctgagcccttttgacttgcaaactggttaatgttggatgc 715

                                                                        
Query: 450  aattatttaaacaaaggcataattttggtctccatccagtgagagaaacctcttgaggtt 509
            ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 714  aattatttacacaaaggcataattttggtctccatccagtgagggaaacctcttgaggtt 655

                                                                        
Query: 510  ccgaataccagatctcctactggcttccggcatgtcagagtacccagggaggtgcaaatt 569
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 654  ccgaataccagatctcctactggcttccagcatgtcagagtacccagggaggtgcaaatt 595

                                                                        
Query: 570  ctcagtcgtccttggagagcatctaggttgaccaccacatccctttccacaaggaaatcc 629
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594  ctcagtcgtccttggagagcatctaggttgaccaccacatccctttccacaaggaaatcc 535

                                                         
Query: 630  tttgtcacttcctgcctttcggctaaaatcaagtgtaagaaatac 674
            |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534  tttgtcacttcctgcctttcggctaaaatcaagtgtaagaaatac 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space:   706496
Effective search space used:   706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)