Query= MSMg01no277_d14.b1 MSMg01no277_d14.b1 CHROMAT_FILE:
MSMg01no277_d14.b1 PHD_FILE: MSMg01no277_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:19 2005
(310 letters)
>mm_chr3_34297857_34298566
Length = 710
Score = 536 bits (277), Expect = e-157
Identities = 301/313 (96%), Gaps = 7/313 (2%)
Strand = Plus / Plus
Query: 5 gaattccatgcaatgtattttttatcatattcatctccaactcctccctttgagttctcc 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 gaattccatgcaatgcattttttatcatattcatctccaactcctccctttgagttctcc 257
Query: 65 cagactcaccccacctccctacacctctaacttcttgggattgtt-------gcttttca 117
||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 258 cagactcaccccacctccctacacctctaacttcttgggattgtttgttgttgcttttca 317
Query: 118 ataacttgttgattctaacgtgttctgtctatattctctttagtgttgaaccacatggtt 177
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 318 ataacttgttgattctaacgtgttctgtctatatactctttagtgttgaaccacatggtt 377
Query: 178 tatctaccatgagccttatcattaaaaaatagaaggggactctcttttgtcagaagtcag 237
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 378 tatctaccgtgagccttatcattaaaaaataggaggggactctcttttgtcagaagtcag 437
Query: 238 tagctccacagttagagatttcttcctcttctacactggagtgttgactgggttgatttt 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tagctccacagttagagatttcttcctcttctacactggagtgttgactgggttgatttt 497
Query: 298 gtgctatgggttc 310
||||| |||||||
Sbjct: 498 gtgctgtgggttc 510
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space: 211001
Effective search space used: 211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no277_d14.g1 MSMg01no277_d14.g1 CHROMAT_FILE:
MSMg01no277_d14.g1 PHD_FILE: MSMg01no277_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:19 2005
(674 letters)
>mm_chr3_34407020_34408093
Length = 1074
Score = 1069 bits (553), Expect = 0.0
Identities = 577/585 (98%)
Strand = Plus / Minus
Query: 90 actcctcaaataagcaagaatagcccagagccctcagggactgagaatctgtcaggcctg 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1074 actcctcaaataagcaagaatagcccagagccctcagggactgagaatctgtcaggcctg 1015
Query: 150 gggacaatgactcaggagaaaagataaagggggtgtgagatggctcagctggcaagggcc 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1014 gggacaatgactcaggagaaaagataaagggggtgtgagatggctcagctggcaagggcc 955
Query: 210 taagttcgatacccacatggtggaagtagggagttgacttccgcagattatcctctgacc 269
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 954 taagttcgatacccacatggtagaagtagggagttgacttccgcagattatcctctgacc 895
Query: 270 tccacatactcactgtgttttgggtgacctacctgccacaaattaatcaataaaaatgta 329
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 894 tccacatactcactgtggcatgggtgacctacctgccacaaattaatcaataaaaatgta 835
Query: 330 atgaaattttctaagatgaaagacaaaaaacttgagccctgcttggtgccaggcaaggcc 389
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 834 atgaaattttctaagatgaaagacgaaaaacttgagccctgcttggtgccaggcaaggcc 775
Query: 390 ttgactcagagtcacattcgctgagcccttttgacttgcaaactggttaatgttggatgc 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 ttgactcagagtcacattcgctgagcccttttgacttgcaaactggttaatgttggatgc 715
Query: 450 aattatttaaacaaaggcataattttggtctccatccagtgagagaaacctcttgaggtt 509
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 714 aattatttacacaaaggcataattttggtctccatccagtgagggaaacctcttgaggtt 655
Query: 510 ccgaataccagatctcctactggcttccggcatgtcagagtacccagggaggtgcaaatt 569
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 654 ccgaataccagatctcctactggcttccagcatgtcagagtacccagggaggtgcaaatt 595
Query: 570 ctcagtcgtccttggagagcatctaggttgaccaccacatccctttccacaaggaaatcc 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 ctcagtcgtccttggagagcatctaggttgaccaccacatccctttccacaaggaaatcc 535
Query: 630 tttgtcacttcctgcctttcggctaaaatcaagtgtaagaaatac 674
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 tttgtcacttcctgcctttcggctaaaatcaagtgtaagaaatac 490
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space: 706496
Effective search space used: 706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
