BAC Information

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BAC

Clone NameMSMg01-277H07
Chromosome3 (Build37)
Map Location 43,722,971 - 43,723,144
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039219, LOC677788, LOC100039264
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277H07.T7 (MSMg01no277_h07.b1)MSMg01-277H07.TJ (MSMg01no277_h07.g1)
ACCAG415351AG415352
length739734
length of high quality
(start - end)
98 (441 - 538)176 (193 - 368)
definitionCHROMAT_FILE: MSMg01no277_h07.b1 PHD_FILE: MSMg01no277_h07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:36 2005CHROMAT_FILE: MSMg01no277_h07.g1 PHD_FILE: MSMg01no277_h07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATTGTTTTTTACACCAGACCTGTACTCCGTTGTGTACATGTGCCACGA
TTTCTGTATCCATTTTTTTGTCGCTAAACATCTGGTTTCTTTTCATCTTC
TGGCCATTATAAATAATACTGCTATGAACATAATGGATCATGTGTCCTTA
TTACATTTTGGATCTTTTTCTGTATATATGCCCATGAATGGGATAGCTGT
GTCCTCAGGTAGTGCTATGTCCAATTTTCTGAGGAACCACCACACTGATT
TCCACAGCGCTTGCCTCACCTTTTTTCTATAGATGATCTTAACGCCTGGG
ACATTGGTGTTTGTTGTTGCAACCCCCCCCCCGTGACACTGTGTGTCAGG
CTCTTTTCCAATTCCTCTTCTAATAGAAAAAAATATATTGTTTTATATGG
CAGGTTTTGATCCATTTGGTCTTGATATTTGCCTCATATGCAGCCACCAA
ACCCAGTTACTATTGCTGATTCCAAGAAGTTCCTGCAACACAGGAGCCTG
ATATTGCTATCTTCTAAGAGTTTCTGCCAGAGCCTTACTGATACAGATAC
TGATGCTTGTAGTCAAACATTGAATTGATTTACTGGTAACCCATAGTAGG
AATTATGGCAAAGACTGCCTTGGGGTTTGCAACACCTTTATTAACATCTT
TCACTATCCTTCCCACCATGGCTCCCCTATAACTATCCA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGGAAAAGGGGAAGAAGGATAAAC
CAGGTTGAATCAGACAACTTATAGTACCCTGAGCTAGAACAGCTAAGTTG
ACCTTGGTGGAATTCAGAAGGAACTACAAAGGTGTCATACTCAGCAGTAA
ATCTCAGAGGCTAAAACATTCAAGGCCAAGATTCTGTTAGGATGTAGGTA
AAATATTAAGACCTATATAAAATGGTAAGATTTGGGTAACAGTAACTTGT
TCAGCCTGATCTTATAAAGAAACTTTCTGTAGCTACTAGGTAACATTCTC
ATGCCAAGATCTATTATTTGTTTCTGTTCCGNCCGAGCCCTTGTAAAACC
AATTATTATAGAAATCAGTAGGACTGTTTTGTAAAAAAAAAAACTCACTG
TGAGCTTGGACATGACCCAAATACCCAAAAGCACTTCCTGCACCTTTTGT
CATAAGTTGCCCCTGGGTTGGATCCCATCATGGTAGACACCTGTACAAAT
ATAAGATACTATTTGGAATAAGACTTTCCTTTTTAATTGTGGTCAAGTAA
CATTTAAGTTCCCAAGACTTCCTTGGGAACTGGTCTCATACTTGGTAAAA
AGAGACCCGTACGTGGGTAACTGTCATCCCGGTTTGGATGTTAATACAAG
AATGTTAGACATATCTCTTTCCTGGTAGACAAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_h07.g1 MSMg01no277_h07.g1 CHROMAT_FILE:
MSMg01no277_h07.g1 PHD_FILE: MSMg01no277_h07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:36 2005
         (176 letters)



>mm_chr3_43722731_43723306
          Length = 576

 Score =  337 bits (174), Expect = 3e-97
 Identities = 174/174 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcagtaaatctcagaggctaaaacattcaaggccaagattctgttaggatgtaggtaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 agcagtaaatctcagaggctaaaacattcaaggccaagattctgttaggatgtaggtaaa 355

                                                                       
Query: 61  atattaagacctatataaaatggtaagatttgggtaacagtaacttgttcagcctgatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 atattaagacctatataaaatggtaagatttgggtaacagtaacttgttcagcctgatct 295

                                                                 
Query: 121 tataaagaaactttctgtagctactaggtaacattctcatgccaagatctatta 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 tataaagaaactttctgtagctactaggtaacattctcatgccaagatctatta 241


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 176
Length of database: 576
Length adjustment: 8
Effective length of query: 168
Effective length of database: 568
Effective search space:    95424
Effective search space used:    95424
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)