BAC Information

Click to search

BAC

Clone NameMSMg01-277I07
Chromosome3 (Build37)
Map Location 43,722,968 - 43,723,260
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039219, LOC677788, LOC100039264
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277I07.T7 (MSMg01no277_i07.b1)MSMg01-277I07.TJ (MSMg01no277_i07.g1)
ACCAG415396AG415397
length755757
length of high quality
(start - end)
310 (439 - 748)293 (77 - 369)
definitionCHROMAT_FILE: MSMg01no277_i07.b1 PHD_FILE: MSMg01no277_i07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:40 2005CHROMAT_FILE: MSMg01no277_i07.g1 PHD_FILE: MSMg01no277_i07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTGTTTTTTATCGCTGAGTTGTACTCCATTGTGTACATGTGCCA
CGTTTTCTGTATCCATTCTTCTGTTCCCGGACATCTGGGTTCTTTTCAGC
TTCTGGCAATTATAAATAAGACTGCTATGAACATAGTGGAGCATGTGTCC
TTATTACATTTTGGATCTTTTTCTGGGTATATGCCCAGGAATGGTATAGC
TGTGTCCTCAGGTAGTGCTATGTCCAATTTTCTGAGGAACCACCACACTG
ATTTCCAGAGTGCTTGTCTCACCTTTTTTCTATAGTTGATCTTAGCGCCT
GGGCCATTGGTGTGTGTTTTTTGAACTTTTCCCCTGTGCCACTGTGTGTC
AGGCTCTTTTCCAATTCCTCTTCTAATAGATTCACTGAATATTGTTTTAT
ATGGCAGTTTTTGATCCATTTGGTCTTGATATTTGCCTCATATGCAGCCA
CCAAACCCAGTTACTATTGCTGATTCCAAGAAGTTCCTGCAACACAGGAG
CCTGATATTGCTATCTTCTAAGAGTTTCTGCCAGAGCCTTACTGATACAG
ATACAGATGCTTGTAGCCAAACATTGGATTGATTACTGGGAACCCAAAGG
AGGAGTTAGGGGAAGGACTGCTGGGGTTTGCAACACCATAGGAAGAGCAA
CAGTAGCAACCAACCAGGCACCCCAGAGCCACCAGTGACTAACCACCAAA
CAAAG
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGGAAAAGGGGAAGAAAGAGAAAC
CAGTTTGAATCAGTCAACTTAGAGTAACCCGAGCTAGAACAGCTAAGTTG
ACCTTGCTGGCATTCAGAAGGAACTACAAAGGTGTCATACTCAGCAGTAA
ATCTCAGAGGCTAAAACATTCAAGGCCAAGATTCTGTTAGGATGTAGGTA
AAATATTAAGACCTATATAAAATGGTAAGATTTGGGTAACAGTAACTTGT
TCAGCCTGATCTTATAAAGAAACTTTCTGTAGCTACTAGGTAACATTCTC
ATGCCAAGATCTATTACATGTTCTGTTTTGCCTCCGCCGCTCTTGTAAAA
CCAATTATTATAGAAATCAGTAGGACTGTTTTGTATCCTTACTCACTCAC
TGTAAGCTTGGACATGACCCAAATACCCAAAAGCACTTCCTGCACCTTTT
GTCATAAGTTGCCCCTGGGTTGGATCCCATCATGGGAGACACCTGTACAA
ATATAAGAAACTATTTGGAATAAGACTTTCCTTTTTAATTGTGGTCAAGT
AACATTTAAGTTCCCAAGACTTCCTTGGGAACTGGCCTCATACTTGGTAG
AAAGAGACCTGTACGTGGGTAACTGTCATCCTGGTTGGCATGTTAATACA
AGAATGTTAGACAAATCTCTTCCTGGTAGACAAGTTAAGACCTGAATATT
AGACAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_i07.g1 MSMg01no277_i07.g1 CHROMAT_FILE:
MSMg01no277_i07.g1 PHD_FILE: MSMg01no277_i07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:40 2005
         (293 letters)



>mm_chr3_43722612_43723304
          Length = 693

 Score =  520 bits (269), Expect = e-152
 Identities = 287/293 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggaaaaggggaagaaagagaaaccagtttgaatcagtcaacttagagtaacccgagcta 60
           |||||||||| ||||||||||| ||||||| ||||||||||||||||||||   ||||||
Sbjct: 649 aggaaaagggaaagaaagagaagccagtttaaatcagtcaacttagagtaatttgagcta 590

                                                                       
Query: 61  gaacagctaagttgaccttgctggcattcagaaggaactacaaaggtgtcatactcagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 gaacagctaagttgaccttgctggcattcagaaggaactacaaaggtgtcatactcagca 530

                                                                       
Query: 121 gtaaatctcagaggctaaaacattcaaggccaagattctgttaggatgtaggtaaaatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 gtaaatctcagaggctaaaacattcaaggccaagattctgttaggatgtaggtaaaatat 470

                                                                       
Query: 181 taagacctatataaaatggtaagatttgggtaacagtaacttgttcagcctgatcttata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 taagacctatataaaatggtaagatttgggtaacagtaacttgttcagcctgatcttata 410

                                                                
Query: 241 aagaaactttctgtagctactaggtaacattctcatgccaagatctattacat 293
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 aagaaactttctgtagctactaggtaacattctcatgccaagatctattacat 357


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)