BAC Information

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BAC

Clone NameMSMg01-277K23
Chromosome3 (Build37)
Map Location 86,353,722 - 86,353,953
singlet/doubletsinglet
Overlap geneLrba, EG667024
Upstream geneLOC100042237, LOC100042125, Pet112l, 9930021J17Rik, Glt28d2, LOC100042265, Gm1019, Sh3d19, Rps3a, LOC634201, Mab21l2
Downstream geneLOC100042319, Dclk2, EG625055, Cd1d2, Cd1d1, LOC667897, Kirrel1, LOC100042355, Msr2, Cd5l, Fcrl1, Fcrl5, Etv3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277K23.T7 (MSMg01no277_k23.b1)MSMg01-277K23.TJ (MSMg01no277_k23.g1)
ACCAG415516AG415517
length754761
length of high quality
(start - end)
322 (45 - 366)239 (131 - 369)
definitionCHROMAT_FILE: MSMg01no277_k23.b1 PHD_FILE: MSMg01no277_k23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:52 2005CHROMAT_FILE: MSMg01no277_k23.g1 PHD_FILE: MSMg01no277_k23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTGATCTTTCCACAACTTTTATCATGAATGGGTGTTGGATCTTGTC
AAATGCTTTTTCTGCATCTTTCGACCTGATCATGTGGTTTTTGTCTTTGA
GTTTGTTTATATAGTGGATTACATTGATGGATTTTCGTATATTAAACCAT
CCCTGCATTCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTGCTTT
AATGTGATCTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTTTGCAT
CGATATTCATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGATCT
TTCTGTGGTTTATGTATTTTATTAATCCCGGCTTCATAAAATGAGTTGGG
TAGAGTACTTTCTACTTCTATCTTGTGAAAAAGATTGTGCAGAACTGGAA
TTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCCGTCTGGT
CCTGGGCTTTTTTTGGCTGGGAGACTATTTATAACTGCTTCTATTTCTTT
AGGGGATATGGGACTGTTTAGAAGGTCAACTTGATCCTGATTCAACTTTG
GTACCTGGTATCTGTCCAGAAATTTGTCCATTTCGTCCAGGTTTTCCAGT
TTTGTTGAGTATAGCCTTTTGTAGAAGGATCTGATGGTGTTTTGGATTTC
TTCAGGCTCTGTTGTTATGTCTCCCTTTTCAGTTCTGATTTTGTTAATTA
GGAA
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGGTTCTGGTAGGTTTCAAAAAAT
GCAAGTCAAGCTCTCCTACGGTTTTTTCCAAAAGTTATACACAGCTTTTT
TTTTTAAAAAAAAAAAAAACGGGCTAAAGATTTTATTTTCCCTATGCATA
ACCCACGGCTTAAATATTATCTGCCAAATCAACCTAAAAATAGCCCTTAA
CTACCTGAGTGTATTAAAACAACTGAGAGCCCTGGCATCTTAAATTCTGA
GATAAACTCCCAGTAGCAAGTGAATCACCTTGCTGCAGCCCTTGTTTTTC
CAAAAGTCCTACGAGGTTGCAATCACTCCGNNTCGTTACCGATAACACAT
ATTCTAAGGAACAAGAGCGACTGAGTTTTAGAGAAAAAAAAAAAAGGAGG
AAGGCCATCTGGGTAATCAATAACAGTAAAGTTATAGATTTTTATCCCAG
TCAACTCCTTTAAAAGCAAGAATCAATTATGAAAATAAAATTATTCTAAA
CCAGTACTGCCCAAGAATATGTTCACAATTAACGTCACAGTATTTAAAAA
ATTAAGAAAACCTGAATTCAGGCTCATTTTTTTTCCTTCATTTTAATTTA
AGTCTAAACTATTTTGGTAGCTTATTTCAATCAGCAAGTATAACCAAGTA
ATGTATGCTAATATATAAACTTACAGTTTCTCAAAACTCACATATTTTCT
CTCTAGTTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_k23.g1 MSMg01no277_k23.g1 CHROMAT_FILE:
MSMg01no277_k23.g1 PHD_FILE: MSMg01no277_k23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:52 2005
         (239 letters)



>mm_chr3_86353483_86354121
          Length = 639

 Score =  429 bits (222), Expect = e-125
 Identities = 231/236 (97%), Gaps = 4/236 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagttatacacagcttttttttttaaaaaaaaaaaaaacgggctaaagattttattttc 60
           |||||||||||||||    ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 471 aaagttatacacagc----tttttaaaaaaaaaaaaaaacgggctaaagattttattttc 416

                                                                       
Query: 61  cctatgcataacccacggcttaaatattatctgccaaatcaacctaaaaatagcccttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 cctatgcataacccacggcttaaatattatctgccaaatcaacctaaaaatagcccttaa 356

                                                                       
Query: 121 ctacctgagtgtattaaaacaactgagagccctggcatcttaaattctgagataaactcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 ctacctgagtgtattaaaacaactgagagccctggcatcttaaattctgagataaactcc 296

                                                                   
Query: 181 cagtagcaagtgaatcaccttgctgcagcccttgtttttccaaaagtcctacgagg 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 cagtagcaagtgaatcaccttgctgcagcccttgtttttccaaaagtcctacgagg 240


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)