BAC Information

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BAC

Clone NameMSMg01-277L12
Chromosome3 (Build37)
Map Location 82,891,500 - 83,049,685
singlet/doubletdoublet
Overlap geneEG627094, Dchs2
Upstream geneGucy1a3, Mtap9, Npy2r, LOC100041940, EG633285, Lrat, Fgg, Fga, Fgb, Plrg1
Downstream gene1700028M03Rik, LOC100042007, LOC100042091, Sfrp2, LOC633522, Tlr2, D930015E06Rik, Mnd1, Trim2, EG624713
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277L12.T7 (MSMg01no277_l12.b1)MSMg01-277L12.TJ (MSMg01no277_l12.g1)
ACCAG415541AG415542
length763739
length of high quality
(start - end)
235 (120 - 354)285 (77 - 361)
definitionCHROMAT_FILE: MSMg01no277_l12.b1 PHD_FILE: MSMg01no277_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:54 2005CHROMAT_FILE: MSMg01no277_l12.g1 PHD_FILE: MSMg01no277_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,049,455 - 83,049,685)(82,891,500 - 82,891,782)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTCTTTCGGGGAATTCCCTCCTATCATATCCAGCTATGAATGCTTTTG
ATGTATTTCATACATATTACTCCTCATTAGGTTGTTACAATCTCACTTTT
TCTGGTTTCCATGTCTTTCTTCCTAGTTCAATAAGAAACTAAGGTACAGA
GATGCCCAGGGACCAGCTCAGAGTACAGAAGACTATAGATCCATGAACAT
GAAGTTCATGTATCAGTCTCCCATGACTTTCTCTGTCTTGGAGTGAAGTT
ATAACCAGATGTTTGTAGTCATGCTAAGGTGTGGGCCTGCATTGGCTCTT
TTTTTTTCTCCCCCCTCCCTCTGAGGGGAGAATGTTGGGAAATCAGCACC
CCATGCACAGATTAAAAAAAAATCTAATCCTAGCTGTCGTTTCTCGTTCC
AAGCCTGTTGTCCAGCTCATAGAGACCAGTCTTATTACCTATCTCAGATA
CTGATGTTTATTCTATCCCGGATAGTGTCTTACAATCTCTGGAAACTCAT
ACACTGTTTTTGTCTATCCCTCTTAATTTTGATGTAAATCGTTTTTACTC
CCTTTTTGCGTTCTATACTTCTCCTACCTCTCTTATTATTATCGTTTCCT
CACTTCCTTTCTTTCTCCCTCTCATTATTACTCTTTTGATTACTACTAAT
TATCTTCTTTTGACCTTTATCCTTATTGTCCTCCCCATTGCCTATTTTCT
TCACTATCAATAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTTTGCACAAGACTGGAAACAAG
ATATTCATTTGGGAAGAAGCCTGAATAGCTTAGAGGTTTGGAATGAAGTA
ATAATTGCTCAGTGTTTGCCTTAAGGAAAATTTAATAAAAAAGAAAACAA
AACTTTAAATGTCTCTCATCACTCACCTTGCCTGGTCCTTTCCTCTCACC
TTTTCTTGATATTCAGCATGGTTGACCTTCCCAGGGTCTGGCCACTGGTC
CTTCTTAGCATGTTCTTCTCTCGCCTCCTAGTTTCTTCCTACATCAGCTG
TTATTTTTCTTGAAACAAAATTTAAATGTCAAGCTGATAGGTAGAGTTTA
TGCTTGGAAAGCCACCAAGCTGGGGAAAGACCCGGGGATCCAAGCTTTCA
TTTCTTGTTCTTGGGATGCAATTAAGTCTGAGCCCCGCGGTGAGAAATAC
TCACAGGCTGTGAATATTTCTAGATAGAGTTGGCTTATTCCACACAGTCA
AGATCCTGCTAAGAATTTCTCCCGTACTTGATGCTGATAAACTTGAGACG
TTTTTGTTTTGCGTATTTAACGCCTCCCGTTCACTGGACATCTAAATTTC
CTTCCTGGCTTTCTATGATGCCCTTTACAGTTTACATATGATGCGTGCAC
CTTGATACTTGGGCTCCCTGCGTATACCGGCCCACACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_l12.b1 MSMg01no277_l12.b1 CHROMAT_FILE:
MSMg01no277_l12.b1 PHD_FILE: MSMg01no277_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:54 2005
         (235 letters)



>mm_chr3_83049255_83049889
          Length = 635

 Score =  416 bits (215), Expect = e-121
 Identities = 227/231 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcctcattaggttgttacaatctcactttttctggtttccatgtctttcttcctagttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ctcctcattaggttgttacaatctcactttttctggtttccatgtctttcttcctagttc 372

                                                                       
Query: 61  aataagaaactaaggtacagagatgcccagggaccagctcagagtacagaagactataga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 aataagaaactaaggtacagagatgcccagggaccagctcagagtacagaagactataga 312

                                                                       
Query: 121 tccatgaacatgaagttcatgtatcagtctcccatgactttctctgtcttggagtgaagt 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 311 tccatgaacatgaagttcatgtattagtctcccatgactttctctgtcttggagtgaagt 252

                                                              
Query: 181 tataaccagatgtttgtagtcatgctaaggtgtgggcctgcattggctctt 231
           ||||||||||||  || ||||||||||||||||||||||||||||||||||
Sbjct: 251 tataaccagatggctgcagtcatgctaaggtgtgggcctgcattggctctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no277_l12.g1 MSMg01no277_l12.g1 CHROMAT_FILE:
MSMg01no277_l12.g1 PHD_FILE: MSMg01no277_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:54 2005
         (285 letters)



>mm_chr3_82891300_82891984
          Length = 685

 Score =  547 bits (283), Expect = e-160
 Identities = 283/283 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctttgcacaagactggaaacaagatattcatttgggaagaagcctgaatagcttagagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctttgcacaagactggaaacaagatattcatttgggaagaagcctgaatagcttagagg 260

                                                                       
Query: 61  tttggaatgaagtaataattgctcagtgtttgccttaaggaaaatttaataaaaaagaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttggaatgaagtaataattgctcagtgtttgccttaaggaaaatttaataaaaaagaaa 320

                                                                       
Query: 121 acaaaactttaaatgtctctcatcactcaccttgcctggtcctttcctctcaccttttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaaaactttaaatgtctctcatcactcaccttgcctggtcctttcctctcaccttttct 380

                                                                       
Query: 181 tgatattcagcatggttgaccttcccagggtctggccactggtccttcttagcatgttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgatattcagcatggttgaccttcccagggtctggccactggtccttcttagcatgttct 440

                                                      
Query: 241 tctctcgcctcctagtttcttcctacatcagctgttatttttc 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctctcgcctcctagtttcttcctacatcagctgttatttttc 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)