BAC Information

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BAC

Clone NameMSMg01-278F17
Chromosome3 (Build37)
Map Location 116,791,291 - 116,791,612
singlet/doubletsinglet
Overlap genenone
Upstream geneVcam1, Gpr88, Cdc14a, Rtcd1, Dbt, LOC100043702, LOC100043705, Lrrc39, A930028L21Rik, Sass6, Hiat1, Slc35a3, Agl, LOC100043710, LOC100043250, Frrs1, Palmd, EG668749, 1700061I17Rik
Downstream geneLOC674908, D3Bwg0562e, 4833424O15Rik, EG668759, Snx7, LOC100043260
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278F17.T7 (MSMg01no278_f17.b1)MSMg01-278F17.TJ (MSMg01no278_f17.g1)
ACCAG416002AG416003
length729731
length of high quality
(start - end)
638 (45 - 682)322 (383 - 704)
definitionCHROMAT_FILE: MSMg01no278_f17.b1 PHD_FILE: MSMg01no278_f17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:40 2005CHROMAT_FILE: MSMg01no278_f17.g1 PHD_FILE: MSMg01no278_f17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTCTTTCCGTCCTCTACCATCATCATGAGATATGCTTTTAAATCC
AGGTCTACCTTTTCAGGTGCGTTAGGGTGTCCTGGATTGGGCGAAGTGGG
CGTTCTGGGTTCTGATGATGGTGAGTGGTCCTGGCTTCTGTTAGTAGGAT
TCTTACGTTTACCTTTCGCCATCTGGCAATCTCTGGAGTTAGTTGTTACA
GTTGTCTTTGTTAAAAGATTGTTCCTCTGTTGATTTTGTTACCCTCTATC
AGCAGGCGTGGGAGACAAGCTCTCTTCTCTGAGTTTCAGTGGTCAGAGCA
GTCTCTGTAGGCAAGCTCTCCTCTCTCAGGGAAGGTGTACAGTTATCTGG
TGTTTGGACCTCCTCCTGGCTGAAGGTGAAGGCCCAAAACAGGATCTTTC
CCAGAAGCTGTGTTGCTTTGGCCAGGAAGGTGGCCAGTTGTCTGGAGTCG
AAGATGTCGCAGCCTCAGAAGCTCTGTGGCTCTTGCCGGGAAGGTGGCTG
GTTGTCTGGAGCTGAGGATGGTGCCGCCCCAGAATCTCTGCGACTCTCTC
GTCCGTCCCAGAAACAGCTGGCACTCTGTATTCCACACGGTCACCCGTGC
AGCCTGCCCTCCGCGGAGTCCCGGAGCCAAGATGGCTCCCGCCGGCGCCT
GTTGCCCAAACCTCTCATGTCAGGGAGAC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGAGGGAAGTGAAGAGAAGGCAAG
AGGGTAAATAAAATTTAAATACCCTGTGTTAACTAAATAAGCAAATAAAT
ATTTTTTAAAAATTATATTGTTTTACCATTCCCTATTAGATACTGTCTTT
TAATCTGCTAAATTTTTGACTCATGGTACTTGGCATTTATAGTAATTAAA
TCTTTTATGTATCCACTAATCTTTGCTAATGAAAATGACTCAAATAAACT
GAGTATGTCTCCTAGGATGAATATGGTTCTGCACTGTAGTTCTGCTCCTA
AACTGTCCTGTGATTTAAAAACCCCCCCCCTATGTCTTGGGTTTGGAAGT
TCATGATGTCATTCTTAATGGAATTGAAGAGACTGGAGAATGTTCATTAT
TTAATGACTGTAATGGGCTCTGAAAGCGTTCTGTACTCTGTGTGATTTTC
AATGCCAAGCCACCAAAATCAAAGGGGAAAGAAAAATCACCTAGTTGCCA
TGGGAGTCAATCTCTCCATGAGTCAGGGAAACTCACCTCACATACAGCTT
CCAAATTATGTTAACTATTTGAGTTTGTATTTTTACCCAAATTACCTTAA
AACACCTCAAATCAGTACTCCAGCTTGGTGAAATGGTCTGGAATTGTATC
TGAGGTAAGACAAGCTATTTTCTTCAGAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_f17.g1 MSMg01no278_f17.g1 CHROMAT_FILE:
MSMg01no278_f17.g1 PHD_FILE: MSMg01no278_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:40 2005
         (322 letters)



>mm_chr3_116791091_116791812
          Length = 722

 Score =  607 bits (314), Expect = e-178
 Identities = 320/322 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtcttgggtttggaagttcatgatgtcattcttaatggaattgaagagactggagaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 522 tgtcttgggtttggaagttcatgatgtcattcttaatggaattggtgagactggagaatg 463

                                                                       
Query: 61  ttcattatttaatgactgtaatgggctctgaaagcgttctgtactctgtgtgattttcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ttcattatttaatgactgtaatgggctctgaaagcgttctgtactctgtgtgattttcaa 403

                                                                       
Query: 121 tgccaagccaccaaaatcaaaggggaaagaaaaatcacctagttgccatgggagtcaatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tgccaagccaccaaaatcaaaggggaaagaaaaatcacctagttgccatgggagtcaatc 343

                                                                       
Query: 181 tctccatgagtcagggaaactcacctcacatacagcttccaaattatgttaactatttga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tctccatgagtcagggaaactcacctcacatacagcttccaaattatgttaactatttga 283

                                                                       
Query: 241 gtttgtatttttacccaaattaccttaaaacacctcaaatcagtactccagcttggtgaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gtttgtatttttacccaaattaccttaaaacacctcaaatcagtactccagcttggtgaa 223

                                 
Query: 301 atggtctggaattgtatctgag 322
           ||||||||||||||||||||||
Sbjct: 222 atggtctggaattgtatctgag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)