BAC Information

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BAC

Clone NameMSMg01-278L04
Chromosome3 (Build37)
Map Location 53,660,518 - 53,660,768
singlet/doubletsinglet
Overlap geneUfm1
Upstream geneCog6, Lhfp, LOC100039808, LOC666413, 8030451K01Rik, 2810046L04Rik, Stoml3, Frem2, Ppia-ps3_416.1, LOC621155
Downstream geneEG666444, LOC100039937, Trpc4, Postn, LOC100039951, LOC434807, B020017C02Rik, D3Ertd300e, Exosc8, Alg5, Smad9, Rfxap, LOC545524
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278L04.T7 (MSMg01no278_l04.b1)MSMg01-278L04.TJ (MSMg01no278_l04.g1)
ACCAG416257AG416258
length707716
length of high quality
(start - end)
315 (21 - 335)288 (60 - 347)
definitionCHROMAT_FILE: MSMg01no278_l04.b1 PHD_FILE: MSMg01no278_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:06 2005CHROMAT_FILE: MSMg01no278_l04.g1 PHD_FILE: MSMg01no278_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:06 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CAACTACTATAGGGAGAGGATCCGCGGAATTCAGTAAATATTTATTGAGA
ACTCGTATCTCTCTCTAACTCTAAGGAGCATGTGACAGACCCCTTACCTC
CAAAGAGCTAACCCACTAAAGCAGAGCTGCCTGGCTCTCACTCAGTCACT
GTCAGCATTTAATTCATCCTGAAACATGTGCCAGACATGGACTTTCTGTG
TAAAGGCAAATAGTCATGGTGGGAGGGGACTGGCTCACATCTGGGTGTCT
GAGTAAGGTTAGAGGATGACTCTGGGGAGTTTACCAACTCCTTCTTCCTT
CTTGCTTCTCCTTCATTCTGAAGAAGAAGAGTATCGGTTACATCCCTGNN
NACANTNGAACTCTTATGTAAATCCTTGTAGATTGCTACGGTGAGTTTAG
AAAAAAAAGACATTGCTTTCTGACCCTGTGCCCAGTACTCTCCTCCCTTT
CACACTTTCCCACCCCTGCTGCGGCTTCGTTCTCTGACCTCTGCCTTTGG
ACACTGCCAGCCTCCTGTTCCTCCTCACTTCCTCTGCTCTTCTGGGAAGG
GCCTGGCTATCTTTGCATCCCTGGCCCCTTATCCACTGTGACTATATTAA
CAGCTTCTTTAAAGTTCCCTCTTCATTAAGGAAACCCACCAATGCTTCAG
ATCATCTCTGCAACAATAATTTTGGATGCTGCTCAAAATATAATCCTCAA
AACACTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAA
ATGTTCACAATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGA
GATTCCACCTCACACCAGTCAGAATGGCTAAGATAAAAAACTCAGGTGAC
AGCAGATACTGGCGAGGATGTGGAGAAAGGGGAACACTCCTCCATTGTTG
GTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCC
TCATAATATTGGACAAGTTCTACCGGAGGATCCCGCAATACCTCTTTTGT
TCCCCCATCCAGCCCATGTCCCAACTGGTAAGAAGGACACATGCTCCACT
ATGTTCATAGAAACCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAG
ATGTCCCTCAACAGAGGAATGGATACAAAAAATGTGGTACATTTACACAA
TGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAGTTCCTAGGC
AAATGGATGGACCTGGAGGGAATCATCCTGAGTGAGGTAACACAATCTCT
AAAGAACTCACATGATATGTACTCACTGATAAGTGTATAAGCCCAGAGAC
TTAGAATACTCCAGATATAATATACCATTTGTGAAACACATGATACTCAC
GAAGACCGAAGACCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_l04.b1 MSMg01no278_l04.b1 CHROMAT_FILE:
MSMg01no278_l04.b1 PHD_FILE: MSMg01no278_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:06 2005
         (315 letters)



>mm_chr3_53660312_53661022
          Length = 711

 Score =  474 bits (245), Expect = e-138
 Identities = 251/255 (98%), Gaps = 4/255 (1%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcagtaaatatttattgagaactcgtatctctctctaactctaaggagcatgtgac 66
           ||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||
Sbjct: 207 gaattcagtaaatatttattgagaactcgtatctct----aactctaaggagcatgtgac 262

                                                                       
Query: 67  agaccccttacctccaaagagctaacccactaaagcagagctgcctggctctcactcagt 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 agaccccttacctccaaagagctaacccactaaagcagagctgcctggctctcactcagt 322

                                                                       
Query: 127 cactgtcagcatttaattcatcctgaaacatgtgccagacatggactttctgtgtaaagg 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cactgtcagcatttaattcatcctgaaacatgtgccagacatggactttctgtgtaaagg 382

                                                                       
Query: 187 caaatagtcatggtgggaggggactggctcacatctgggtgtctgagtaaggttagagga 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 caaatagtcatggtgggaggggactggctcacatctgggtgtctgagtaaggttagagga 442

                          
Query: 247 tgactctggggagtt 261
           |||||||||||||||
Sbjct: 443 tgactctggggagtt 457


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 711
Length adjustment: 9
Effective length of query: 306
Effective length of database: 702
Effective search space:   214812
Effective search space used:   214812
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)