BAC Information

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BAC

Clone NameMSMg01-279L12
Chromosome3 (Build37)
Map Location 64,420,117 - 64,420,259
singlet/doubletsinglet
Overlap gene4930518C23Rik
Upstream genePlch1, LOC100040836, E130311K13Rik, Slc33a1, Gmps, LOC670032, EG56544, LOC380739, EG637004, EG667031, EG637053, LOC672951, EG639869, EG667060, EG667069, LOC100040918
Downstream gene4933425M15Rik, LOC670110, Kcnab1, Ssr3, EG433604, EG667093, LOC100041083, 4931440P22Rik, Tiparp, LOC545530, LOC100040978
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279L12.T7 (MSMg01no279_l12.b1)MSMg01-279L12.TJ (MSMg01no279_l12.g1)
ACCAG417003AG417004
length797773
length of high quality
(start - end)
144 (60 - 203)296 (77 - 372)
definitionCHROMAT_FILE: MSMg01no279_l12.b1 PHD_FILE: MSMg01no279_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:23 2005CHROMAT_FILE: MSMg01no279_l12.g1 PHD_FILE: MSMg01no279_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:23 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
GCGGCGCTATACGACTCCTATTGCGAGAAATCCGCGGAATTCTCCTTATT
TACTAGAACTGAGGACAAAGCTTCATCAAAACCTCTGACAATGAAAGGCT
TCTGAAATAAACTCAGAAGACATATTCAAACCATCAACACAAAACCTATG
AGATGGTTCTCTGGGGAGTGGTATGGAATGCTGATTTCCAGGCTCAAAGT
AGCTAATTAAACCCTTTAATTCACATATTATTTGAACTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTAAATATTATATTATTATATACATAGATA
TATATATTTTTTTTTTAAANTTGNCCCCCCGCTATAAGGAAGGGGAATAT
TTTGTAGGTTTTCCCAAAACCANACCCCTTTGTAAGAAGGGTTATTATTT
TTATGTGGCTTTGTTTGTGAAAAAAAAAAAAAAATGTGGGGGGGGGGGGG
TTGTTCTCCCTTATTTTTTATAATTTTTCCCCTCACTCCCTCCACCTCAT
TTTCTATATATAATACGGTCAATATTACTTTTATAATTTTTTATGCTTAT
CTACTATATTTAAACAAATATTTTTCTTTTATTATTTGTTTTTGGACACT
GTTTTGTTCTTTTTGATATCGTATTAATTTTTTATCTCAAGTTCATTTAT
TATTTTTTTAACTATTTTATATTTTTTTAACTCTCTTTTCATCGTATTTT
TTTCTTTTTTTTATTTTATTATATTATTAATTACTTATTTTTTTTATAGT
ATCTTTATTGTCACTTATATATAAATTATTTCTATTGTTTTAATACA
CGATTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGAGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAGAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAATTGTACATAGTACTACCGGAGGATC
CAGCAATACCTCTCCTGTTTTTATATCCACACCACGCCCCAACTGGTAAG
AAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGAAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATCTACACAATGGAGTACTACTCTGCTATTAAAAAGAATGAA
TTTATGACATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTTGA
TGAGGTAACACATTCCCAAAGGAACTCACACAATATGTACTCACTGATTA
GGGTAATTTAGCCCAAAACTAGGATACCCATGATATAAGATATCATTTTT
CTAAACTCCTGATATCTCTTGATAAATGAAGATCAGTGTTGGACCCTTGG
CCCCTCCTTATAAGGGGGAACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_l12.b1 MSMg01no279_l12.b1 CHROMAT_FILE:
MSMg01no279_l12.b1 PHD_FILE: MSMg01no279_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:23 2005
         (144 letters)



>mm_chr3_64419917_64420459
          Length = 543

 Score =  263 bits (136), Expect = 3e-75
 Identities = 142/144 (98%), Gaps = 1/144 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaggacaaagcttcatcaaaacctctgacaatgaaaggcttctgaaataaactcagaag 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 343 tgaggacaaagcttcatcaaaacctctgacaatgaaaggcttctgaaataaaatcagaag 284

                                                                       
Query: 61  acatattcaaaccatcaacacaaaacctatgagatggttctctggggagtggtatggaat 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 acatattcaaacca-caacacaaaacctatgagatggttctctggggagtggtatggaat 225

                                   
Query: 121 gctgatttccaggctcaaagtagc 144
           ||||||||||||||||||||||||
Sbjct: 224 gctgatttccaggctcaaagtagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 144
Length of database: 543
Length adjustment: 8
Effective length of query: 136
Effective length of database: 535
Effective search space:    72760
Effective search space used:    72760
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)