BAC Information

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BAC

Clone NameMSMg01-279P24
Chromosome3 (Build37)
Map Location 118,131,004 - 118,131,237
singlet/doubletsinglet
Overlap genenone
Upstream gene4833424O15Rik, EG668759, Snx7, LOC100043260
Downstream geneDpyd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279P24.T7 (MSMg01no279_p24.b1)MSMg01-279P24.TJ (MSMg01no279_p24.g1)
ACCAG417204AG417205
length770795
length of high quality
(start - end)
31 (435 - 465)236 (192 - 427)
definitionCHROMAT_FILE: MSMg01no279_p24.b1 PHD_FILE: MSMg01no279_p24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:44 2005CHROMAT_FILE: MSMg01no279_p24.g1 PHD_FILE: MSMg01no279_p24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNCCCCAAAACCTAATTNCGGACAACGGNGCAGACNCCGGGGGNGACA
CTCTATAATTGCGGCCGCTAAAAGATCACATTTCGAACCCGNANGNGGAA
NNNNNNTATTACCAGAGGAGAAGGNNNANAGGANNAAGGGNNNNNNNNNN
NANGGANGAANATTAGCGCCAAANAGGGGGAGAAAGGNAGNGGGAGNNAN
AAGNANNAANAGGAGAANAANNAGGAAGGAGGAAAAGNNNNAGGGAGNNN
NAGGGGNANGGGNNAGNNNANANGGNNNGAANANANANGGGGNNGNTTTT
TTAAANAANAAAAAGGGAAAAAAAAAAAGAAAAANAAAAGGGGAAANAGA
NAAAAGAAAATATTTTTTTTTTGTAGANNAANTNNTGAATTTGGAAGGAA
TTGTTTTTTTTTCTCCCCCCCCGCTATATCAGGCTCCTGTCCCATTGTGG
ATGACAACAGGATTAAAAAAAAAAAATTTAATTCTGGGGCGGAGGATTTC
ATTGGGATAGAATTGCCTTGTACTGAGGAGGAAATTAATATAATTTCCTT
TTCAATGACTAAAGGAAAGAGAATCGGAGAAGACTTGAGCTTCCACAGAT
GTAAAGCTACATAATTTATAAAAAAAAACTATGAAAAACTCATTGGTATC
AAAACAAGTAAATGACAACCATTATTAATACTTCGAGAGCTGATGGTTTT
TTTTTTTTTTTGGCAAGTAAAAACAAATTAGGAAAGATGATATGGTATTA
TTAGCGTAATTTCAATTCTT
CTTTTTCCTTCCTTTTTTTTNTNTCTNNTTTTTCTTTCTTTTCTTTTTTT
TTNTNTTNNNTTTACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTCACAA
GCCTGATGTAATCCTTGATGCTGCAGAAACTTTTATGTCTCTTGATGTCT
TGTTTTGTCAATTCCAAATTTTTCTTCCTGCTCAGTAGGTGCTTCATGTG
TAAGAGTTGACGTTAAGAAGGCGACACACAAGTGTGAAAGTTGAAATACT
GTCTCAACTTATAATCAAGAGAAGGCAATATCATTGTTTCTAGCCTGTGA
ACAGATAAGAGAACCCAAAAGGGCTTGATTTGAATGCCCTCCACAGAGTC
TACCAAGAGCATAACAAGGTGATGTTTTTGTTAGTCTACCCCCCCCCCCT
CATTATTGGAAAATAATTACTTTACATTTAACGCTCTTTTAAAAAAAATA
ATTCCTCTGGGAAATGAATTTTAAAAAAAAAGGAAGGACAGACAGTGTTG
AGTGCACCAATGTTCCCATCATGCCATAAATAAAGGAAATGGTTTGCTTA
CCCCAGCTCATGTCTCATAAGAAAACCTATAATCTCTATTTTCCTAAGTG
TTCATTTTATGAATGCCTAGCTATTTCTAAATCAATACTTTTAAATAAAA
GCAAACCAAAGGTGAAATTTCGAGTCTACTTATATATTGGTCAAGCCTTG
AAAACTTTGACTATTCATAAATTTTTCTGAAAACCCTGTCCAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_p24.g1 MSMg01no279_p24.g1 CHROMAT_FILE:
MSMg01no279_p24.g1 PHD_FILE: MSMg01no279_p24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:45 2005
         (236 letters)



>mm_chr3_118130804_118131439
          Length = 636

 Score =  445 bits (230), Expect = e-129
 Identities = 233/234 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgatgtcttgttttgtcaattccaaatttttcttcctgctcagtaggtgcttcatgtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgatgtcttgttttgtcaattccaaatttttcttcctgctcagtaggtgcttcatgtgt 260

                                                                       
Query: 61  aagagttgacgttaagaaggcgacacacaagtgtgaaagttgaaatactgtctcaactta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 aagagttgacgttaagaaggcgacacacaagtgtgaaagttgaaatactgtctcatctta 320

                                                                       
Query: 121 taatcaagagaaggcaatatcattgtttctagcctgtgaacagataagagaacccaaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taatcaagagaaggcaatatcattgtttctagcctgtgaacagataagagaacccaaaag 380

                                                                 
Query: 181 ggcttgatttgaatgccctccacagagtctaccaagagcataacaaggtgatgt 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggcttgatttgaatgccctccacagagtctaccaagagcataacaaggtgatgt 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)