BAC Information

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BAC

Clone NameMSMg01-288K01
Chromosome3 (Build37)
Map Location 99,008,181 - 99,008,471
singlet/doubletsinglet
Overlap geneWars2
Upstream geneReg4, Hmgcs2, Phgdh, Zfp697, LOC100043461, Hsd3b4, LOC100043456, EG545555, LOC676433, Hsd3b5, LOC668543, Hsd3b2, Hsd3b3, Hsd3b6, LOC545556, Hsd3b1, Hao3, LOC668557
Downstream geneTbx15, M6pr-ps, Spag17, LOC623045, Wdr3, Gdap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-288K01.T7 (MSMg01no288_k01.b1)MSMg01-288K01.TJ (MSMg01no288_k01.g1)
ACCAG418402AG418403
length737733
length of high quality
(start - end)
691 (47 - 737)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no288_k01.b1 PHD_FILE: MSMg01no288_k01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:45 2005CHROMAT_FILE: MSMg01no288_k01.g1 PHD_FILE: MSMg01no288_k01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCACCTGATGACTACCGAATTGCAGAGAAGCACCTGAAAAAATG
TTCAGCATCCTTAATCATTCAGAGAAATGCAAATCAAAACAACCCTGAGA
TTCCATCTCACACATGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAG
CAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGT
GGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTC
AGAAAATTGAACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGG
CATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTA
TGTTCATAGCAGCCTTATTTATAACATCCAGAAGCTGGAAAGAACCCAGA
TGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAAT
GGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCA
AATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAA
AGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAAAC
CTAGGATACCCAAGATATAAGATACAATTTCCTAAACACATGAAACTCAA
GAAAAATGAAGACTGATGTGTGGACACTATGCCCCTC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACACTGAAGATACTGAAAGAGTTC
TGGCTACCTCCTCACTAGGGATGCCAACGACTTAAACAATAAGCTGCTAT
TTATACTAGTTGGCTTTTTTTAAAATCACTGCTTAGTTATCCTTATCTGT
ATATCAGGTATCATGGCCCAGCCCCTCACCTGTTTCCTTTTAATAACCTT
GACTTAGGTTATTTTCAACTGTTTCAGCCTATCCCTGTTGTCTAGTTAGT
ACTGCTTAGATGCAAAAAGACACTGGTCACCTTTCTTTCTCTCCTTCCTT
TTAGGTGTCTGAACACATTTAGTTAACTTGCACCCTCACCTGCATGGTGA
GACTGCCTCGATTGCAGCACCCACACCAGTGGAAGGTAAATGCCAGAACC
TGAGTGTTAATGGGAAGGAAGGTTTCATTTGTTCTGTGCCAGGTGCTAGG
CATCCTTTAATCAATAAGCTGTCTTGCCCACCCTGGCAGCAGCTTTTCAA
AAATGAAGTTATGTTTCTTTTTCCAAATTCTTCTTCTCTAAATTAATCTT
TTATGAACTTTGTAACTTTGTGATAAGTGTTTTTGAGAAACCCAATTTTC
TAATAATTTCTGGACTTAACTAATGTGGAATCTAGAAAACTGCTTTGTCC
TTGATGAAATGAATGAGAAATTGAGGCGGCATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no288_k01.g1 MSMg01no288_k01.g1 CHROMAT_FILE:
MSMg01no288_k01.g1 PHD_FILE: MSMg01no288_k01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:45 2005
         (291 letters)



>mm_chr3_99007981_99008671
          Length = 691

 Score =  547 bits (283), Expect = e-160
 Identities = 289/291 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acactgaagatactgaaagagttctggctacctcctcactagggatgccaacgacttaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 acactgaagatactgaaagagttctggctacctcctcactagggatgccaaggacttaaa 260

                                                                       
Query: 61  caataagctgctatttatactagttggctttttttaaaatcactgcttagttatccttat 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 caataagctgctatttatactagttggcttttttttaaatcactgcttagttatccttat 320

                                                                       
Query: 121 ctgtatatcaggtatcatggcccagcccctcacctgtttccttttaataaccttgactta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtatatcaggtatcatggcccagcccctcacctgtttccttttaataaccttgactta 380

                                                                       
Query: 181 ggttattttcaactgtttcagcctatccctgttgtctagttagtactgcttagatgcaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggttattttcaactgtttcagcctatccctgttgtctagttagtactgcttagatgcaaa 440

                                                              
Query: 241 aagacactggtcacctttctttctctccttccttttaggtgtctgaacaca 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagacactggtcacctttctttctctccttccttttaggtgtctgaacaca 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)