BAC Information

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BAC

Clone NameMSMg01-289F08
Chromosome3 (Build37)
Map Location 77,806,185 - 77,806,482
singlet/doubletsinglet
Overlap genenone
Upstream geneDnmt3a-ps1
Downstream geneEG626461, LOC667526, LOC626479, LOC100041691, LOC383883, LOC100041748, LOC100041716, LOC100041725, LOC100041766
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-289F08.T7 (MSMg01no289_f08.b1)MSMg01-289F08.TJ (MSMg01no289_f08.g1)
ACCAG418915AG418916
length734766
length of high quality
(start - end)
321 (43 - 363)288 (72 - 359)
definitionCHROMAT_FILE: MSMg01no289_f08.b1 PHD_FILE: MSMg01no289_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:37 2005CHROMAT_FILE: MSMg01no289_f08.g1 PHD_FILE: MSMg01no289_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACAACAAAGGACCTGCAAATGGCTGAGAAGCACTTAAAGAAATGTTTG
TCCTTAATGTAAATCCTTAATCCGGGACATACAAATCAAAATGACCCTGA
GATTCCACTTTACACCAATGAGAATGGCTAAGATCAAAAACTCAAATGAC
AGCACATGGCAAGGATGAGGAAAATTAGGAACATGTCTCTGTTGCTAGTG
GGATTGCACAATGGTCAAACTGCTCTGGAAATCAATCTGGAGGGTTCTCA
GAAAACTGAAAATAGATTTACCTGAAAACTCAATTATACCACTCATGAGT
ATATACCCAAAATATGTCTCACCATGCCACATTGGGACATGTCCCACTAT
GTTCATAGTGGCCCCCCCCCTTATATCCAGAAGCTGGAAACAACCCGGAT
GTCCTACAACAGCAGAATCCATACAGAAAATGTGGTTAATTTACATAATG
GACTACTACTTAGCTATTAAGAGCACATCATGAGTTTGCAGGCAAATGGA
CTGAACTAGATAATATCGTGTTGATGAGATAGCTCAGACTCCAAAGGAAA
TGCATGGTATATACTCACTAATAAGCGGATATTACCCAAAATGAATAGTA
TGTCCAGGATACAATCCACAGAACCTCAGAAGATTAAAAAGCAGAAAGGC
CCAAAGTAAAGAATGTTTCAATTTTCACCTGGGA
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTCCATGTAAGAGAAATGTGCATATGAT
TCAAGTTTGACACTCTTTTATACTTTCTATAATAAAACCAGTATTTCCTC
TGGATTGATGGCTAAAAGAAATGAATGGGTTATAATTGCTATATAATCTG
GCAATTTCTTCTTCTTTCTTTCTTTCTTTCTTTATTTATTTATTTATTTT
ATTTTTTTTTTGTTTTTTTTTTTGAAGGAATTTTTTTAAATTTTTTTTAA
TTAGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCA
TACCCACCTTTTTTTTTTTTTCCCCCCCCCCCCCTCCNNNTTTTTGGTCC
TGGNGTTTTTTTGGCCCCCCTCCCAAAAAAAAAAAAAAAACAAGTGGGGC
GCGCTTTCCAGTGATGCCCGACTTATTCCACCTTCTTCTTATTTTTTACC
TTTTTTACCTTTTCATCGAATTTTTTGCCATTCCTTTTTTTTTTTCACCA
TTGTTCTTCACTCACCTTTCTCCTTTTCTTATCCTTAATTGTCTTTATTT
TTTCCTCATCTTCCATCTTCCTACCTCATTGTATAATAATACACCCTATT
TCCCTTAATCGTTTATATAATGTTATTATTTTTATTATTATTATTAAATC
TTTTCTCTTAANCGCTCTCTTTTTGTTATTCTCACCCTTTATTTTTTCTT
TTTATTTCTCTTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no289_f08.g1 MSMg01no289_f08.g1 CHROMAT_FILE:
MSMg01no289_f08.g1 PHD_FILE: MSMg01no289_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:37 2005
         (288 letters)



>mm_chr3_77805985_77806672
          Length = 688

 Score =  480 bits (248), Expect = e-140
 Identities = 282/298 (94%), Gaps = 11/298 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttccatgtaagagaaatgtgcatatgattcaagtttgacactcttttatactttctata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttccatgtaagagaaatgtgcatatgattcaagtttgacactcttttatactttctata 260

                                                                       
Query: 61  ataaaaccagtatttcctctggattgatggctaaaagaaatgaatgggttataattgcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 ataaaaccagtatttcctctggattgatggctaaaagaaatgaatgggttacaattgcta 320

                                                                       
Query: 121 tataatctggcaatttcttcttctttc-tttctttctttctttatttatttatttattt- 178
           ||||||||||||||||||||||||||  ||| ||| ||| ||||||||||||||||||| 
Sbjct: 321 tataatctggcaatttcttcttcttttatttatttatttatttatttatttatttattta 380

                                                                       
Query: 179 --tattttt-----tttttgtttttttttttgaaggaattttttt--aaattttttttaa 229
             |||||||     |||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 381 tttatttttggttttttttgtttttttttttgaaggaatttttttttaaattttttttaa 440

                                                                     
Query: 230 ttaggtatttagctcatttacatttccaatgctataccaaaagtcccccatacccacc 287
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaggtatttagctcatttacatttccaatgctataccaaaagtcccccatacccacc 498


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)