BAC Information

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BAC

Clone NameMSMg01-289F13
Chromosome3 (Build37)
Map Location 20,422,946 - 20,423,195
singlet/doubletsinglet
Overlap genenone
Upstream geneDnajc5b, EG620290, Trim55, Crh, LOC665002, LOC100039304, LOC100040237, 4632415L05Rik, Cp, Hps3, Hltf, Gyg, Cpa3, EG664965, LOC100040283, Cpb1, Agtr1b
Downstream geneEG665094, LOC100040325
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-289F13.T7 (MSMg01no289_f13.b1)MSMg01-289F13.TJ (MSMg01no289_f13.g1)
ACCAG418922AG418923
length727721
length of high quality
(start - end)
319 (46 - 364)250 (420 - 669)
definitionCHROMAT_FILE: MSMg01no289_f13.b1 PHD_FILE: MSMg01no289_f13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:38 2005CHROMAT_FILE: MSMg01no289_f13.g1 PHD_FILE: MSMg01no289_f13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTATCAGATCTCCAAAGAAGACCTAATACTAATACTTTCAAACTAT
TTCATAAAATAGTAATATTTGGAATGCTACCCAATACATTCTATGAAGCC
ATAGTTACACTGATGCCTAAACCATAAAAGACCCAACAAAGTAAGAGATC
TTCAGACCAATTTCCCTCATGAACATTGATGCAAAAACAATCTTTAAAAT
TCTTGCAGACTGAATACAAGAAGACATCAAAACAGTCATTAGACATGATC
AAGTAGGCTTCATCCCAGGGATGCAGGGATAGCTCAATATACAGAAATCC
ATCAACATAATCCATTACATAAACAAACTCACAGGGGGAAAAAAAAGGAT
CATCTCATTAGATGCCCCCCCACCCATTGACAAAGTACAATAGCCCTTCA
TGCTAAAAGTATTGGAGATACCAGAAATTCAAGGTCCATACCTAAATACA
ATAAAAGCAATATAGAGCAAACCAGTAGCCAACATCAAATTAAGTAGAGG
GAAACTTTGTCCAATTTTCTGAGGAACCGCCAGACTGATTTCCAGAGTGG
TTGTAAAAGCTTGCAATCTCACCAACAATGGAGGAGTGTTCCTCTTTCTC
CACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCATT
CTGACTGGAGTGAAGTGGAATCTCAGG
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCATGGTTGTGTGGCTCATGGCTTTTCTTT
TTTTCCTCTTCTGTTATCCCCCGGTTCCTTTAAATTTCAAAGATACATGA
TTTATTCCTGTTATTTTCATAAATAAGCTGAATAAATGGAAAAATCATAA
AATCTCTGTAGCTTATGTAGTTTGTGTCACCTTATACAAAAGCTAAAGAA
CATTGTTAGATTAAAAAAATCTCTCCTAGAGTCAGGTGGGAAGGTTTTTA
GCTTACAATGGTATCTTAGTTATTTTCTGTTGCTCTGAAAAAGTACCAGA
GAAATAAGGTCTTATTTGTGCTTATGGTTCCAGAGGTATAAGAGTCCATA
ACCATCATTTCCCCACCCCCATGGCATCAGGAAGACATTTGTGGTCTCTG
GAATAGCTGAGGACTCACAACTTGAACTGTGACCAGGAAGTAGAGAAATT
ATAGTGGGAATGGCTCAATACTCTGAAACTTAAGAAACAGAACTCAGGGA
GCCTCAGAGTGTAGCATTCAGGCAGGAGTTCATCTGAGCCTGCCTGAGTC
TGTGGAAGGAGAACTCAGTCATAGGTGGCTTACTTAAGTCATAAGGTGGT
GCAGTATACTCTGAGTCAGATGACAACCTGGGATCCTAATGAGATTGAAG
CCAGTCTGGGCTTGATGGTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no289_f13.g1 MSMg01no289_f13.g1 CHROMAT_FILE:
MSMg01no289_f13.g1 PHD_FILE: MSMg01no289_f13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:38 2005
         (250 letters)



>mm_chr3_20422745_20423395
          Length = 651

 Score =  453 bits (234), Expect = e-132
 Identities = 246/250 (98%), Gaps = 1/250 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   atggcatcaggaagacatttgtggtctctggaatagctgaggactcacaacttgaactgt 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 atggcatcaggaagacatttgtggtctctggaatagctgaggactcacaacttgaactgt 261

                                                                       
Query: 62  gaccaggaagtagagaaattatagtgggaatggctcaatactctgaaacttaagaaacag 121
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gaccaggacgtagagaaattatagtgggaatggctcaatactctgaaacttaagaaacag 321

                                                                       
Query: 122 aactcagggagcctcagagtgtagcattcaggcaggagttcatctgagcctgcctgagtc 181
           |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 322 aactcagggagcctcagagtgtagcattcaggcaggggttcatcttagcctgcctgagtc 381

                                                                       
Query: 182 tgtggaaggagaactcagtcata-ggtggcttacttaagtcataaggtggtgcagtatac 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 382 tgtggaaggagaactcagtcataaggtggcttacttaagtcataaggtggtgcagtatac 441

                     
Query: 241 tctgagtcag 250
           ||||||||||
Sbjct: 442 tctgagtcag 451


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 651
Length adjustment: 9
Effective length of query: 241
Effective length of database: 642
Effective search space:   154722
Effective search space used:   154722
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)